polr2i (rpb9)


Basic Information

Item Value
gene id polr2i
gene name rpb9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21826850 ~ 21830323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165064.2
GTGGAAGCGGGAGACAACATTGCTAGCTAGCCAGAAATTCTGAGTTGTTCATTATTTCGTTGATTTTTATTTGTAAACCATTTCAAATGGATATAGAGGGTGGTACATATGAACCCGGATTCGTTGGGATTCGATTTTGTCAAGAATGCAACAACATGTTGTATCCCAAAGAAGACAAGGAGAATCGAATCCTGCTCTATGCATGCAGGAACTGTGACTATCAACAAGAAGCAGACAACAGCTGCATCTATGTCAACAAGATCACCCATGAAGTTGAtgaGCTGACGCAGATAATTGCAGATGTGTCTCAGGATCCAACGCTACCCCGGACAGAGGATCACCCCTGCCCAAAGTGCGGTCACAAGGAGGCAGTGTTTTTCCAGTCCCACAGTATGAAGGCTGAGGATGCCATGAGGCTGTACTATGTCTGCACGGCCCCTCACTGTGGACACCGCTGGACGGAGTGAAGAAGAGGTCAGATGTATGCATCCACAGCGTCTGCTGTCACCCAACAGGCTACTGTGTCTCACTGGTTCACTGTGGCTGAAATCAGAATGACTGATCATTATGTGGGTCTAAAATACTCAGCCAAATCAGAAACTTTATTTACAGGAATACTAACTTTTTGTGTTAGTTCTTCATCATCTTGTTGGCAAGTATGTCGTGGAACTGCTAAGATTTGTATGGACCACTTAAATCCCATGTATTACCTTGTTGTGGAGGAACACCTAACTGTTGGGACATTGTGTTAATAATGTATTAGCTCTAGTACTTTTTTCAGGTATttgtcttattattattattttttgaactgggagaaataaaataaaaaatac

Function

symbol description
rpb9 Contributes to RNA-directed 5'-3' RNA polymerase activity. Involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

NR:

description
DNA-directed RNA polymerase II subunit RPB9

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03017 RPB9, POLR2I; DNA-directed RNA polymerase II subunit RPB9

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165064.2 True 836 mRNA 0.42 6 21826850 21830323

Neighbor

gene id symbol gene type direction distance location
pglyrp5 polr2i coding downstream 541 21824919 ~ 21826309 (-)
foxg1c LOC106613045 coding downstream 4129 21819254 ~ 21822721 (-)
snrpd2 snrpd2 coding downstream 26385 21796966 ~ 21800465 (-)
vaspb vasp coding downstream 36490 21758038 ~ 21790360 (-)
LOC110504016 LOC106612978 coding downstream 71231 21735107 ~ 21755619 (-)
LOC110504022 NA coding upstream 14902 21845225 ~ 21849537 (-)
LOC110504025 LOC106612974 coding upstream 55176 21885499 ~ 21896235 (-)
LOC110504027 LOC106612972 coding upstream 69298 21899621 ~ 21987496 (-)
LOC110504029 LOC106612970 coding upstream 251112 22081435 ~ 22173799 (-)
mxh LOC106612969 coding upstream 416255 22246578 ~ 22265501 (-)
G1913624 NA non-coding downstream 32601 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 120463 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 121576 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 143546 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 161571 21665040 ~ 21665279 (-)
G1913661 NA non-coding upstream 47899 21878222 ~ 21879232 (-)
G1913793 NA non-coding upstream 241517 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 248972 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 318956 22149279 ~ 22149684 (-)
G1912470 NA other downstream 850614 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1365413 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2135337 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2335242 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2493625 19332841 ~ 19333225 (-)
G1913665 NA other upstream 33265 21863588 ~ 21864274 (-)
G1913663 NA other upstream 40930 21871253 ~ 21872149 (-)
G1915836 NA other upstream 1921520 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4333142 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4380093 26208892 ~ 26241410 (-)

Expression


Co-expression Network