LOC110504022


Basic Information

Item Value
gene id LOC110504022
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21845225 ~ 21849537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470549.2
ACAACCTGTCCCTTCCTGCTCTGAACTGCTCCGGATATCTGAGACATTGGACAGTAGGGCTGGACGAAGTTGTAAAGAGTGGCCACTGGCCAGCTACCGTGACTCACCAGACCATCTTCACAATGGACCTCTTCAAGTCCTTTGAAGACATGAAGGTGTTGACCCCAGGATGCTCCCGTCAAGCCTTTGTGTGAGTTCTTGACAGAAGAACAAAGCCCTTTGGCAGGAGTGGAAAGATATGTGGCGACACATTCCAGAAGGCATTCCTCGATTGGACGTACGGGCGGTTTGAAATAAACCAGCTTTTTAGAAGCGATCTACTCCATTTTCCTGCCTGCTCACAGGAGATGCATGCTGTATCAGTGGATGGGAATCGCAAGCAATACCGCTTCCACAAAGCTTCAGGGCGAAAGACGATGATGTCATCCTTCATCAAACATGTCCATACAAAGACCAACCATCCAATCTTCAGGATAGTCAGACAGGGCATctccagaagaagattgagggGCCTTACCTCATTGTGAAACAGAGGAAACACTACCTCTACTGTTTGACAGACGGCAACAAGAGAAGGCATCAGATTCTGAGAAAAATTGTTGAGGACAAGGCAGCCTTGACAACTGCCATTGTTGAACTTCCCACACAGTAGGCAGAGTTTAGGCTCCCCACAGTGGATGAGCTGCTCAATACTGACAGCTTTTTGTGGTCATGGGAGAGACCTAGCACCAACTGATGTTGGTGAACAGActgcaggaggaagagaggatccTGGTGCAGGAGATGAAGAGGCACTGGGGAGCCTACAAAGAGCAGTGGGAACTCTGGAGGCACTGTCCATACA
>XR_005039368.1
ACAACCTGTCCCTTCCTGCTCTGAACTGCTCCGGATATCTGAGACATTGGACAGTAGGGCTGGACGAAGTTGTAAAGAGTGGCCACTGGCCAGCTACCGTGACTCACCAGACCATCTTCACAATGGACCTCTTCAAGTCCTTTGAAGACATGAAGGTGTTGACCCCAGGATGCTCCCGTCAAGCCTTTGTGTGAGTTCTTGACAGAAGAACAAAGCCCTTTGGCAGGAGTGGAAAGATATGTGGCGACACATTCCAGAAGGCATTCCTCGATTGGACGTACGGGCGGTTTGAAATAAACCAGCTTTTTAGAAGCGATCTACTCCATTTTCCTGCCTGCTCACAGGAGATGCATGCTGTATCAGTGGATGGGAATCGCAAGCAATACCGCTTCCACAAAGCTTCAGGGCGAAAGACGATGATGTCATCCTTCATCAAACATGTCCATACAAAGACCAACCATCCAATCTTCAGGATAGTCAGACAGGGCATctccagaagaagattgagggGCCTTACCTCATTGTGAAACAGAGGAAACACTACCTCTACTGTTTGACAGACGGCAACAAGAGAAGGCATCAGATTCTGAGAAAAATTGTTGAGGACAAGGCAGCCTTGACAACTGCCATTGTTGAACTTCCCACACAGTAGGCAGAGTTTAGGCTCCCCACAGTGGATGAGCTGCTCAATACTGACAGCTTTTTGTGGTCATGGGAGAGACCTAGCACCAGCAATCTTCGACAGACTGATGTTGGTGAACAGActgcaggaggaagagaggatccTGGTGCAGGAGATGAAGAGGCACTGGGGAGCCTACAAAGAGCAGTGGGAACTCTGGAGGCACTGTCCATACA

Function

NR:

description
uncharacterized protein LOC111196396 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470549.2 False 844 mRNA 0.49 6 21845225 21849537
XR_005039368.1 True 858 mRNA 0.49 6 21845225 21849537

Neighbor

gene id symbol gene type direction distance location
polr2i rpb9 coding downstream 14902 21826850 ~ 21830323 (-)
pglyrp5 polr2i coding downstream 18916 21824919 ~ 21826309 (-)
foxg1c LOC106613045 coding downstream 22504 21819254 ~ 21822721 (-)
snrpd2 snrpd2 coding downstream 44760 21796966 ~ 21800465 (-)
vaspb vasp coding downstream 54865 21758038 ~ 21790360 (-)
LOC110504025 LOC106612974 coding upstream 35962 21885499 ~ 21896235 (-)
LOC110504027 LOC106612972 coding upstream 50084 21899621 ~ 21987496 (-)
LOC110504029 LOC106612970 coding upstream 231898 22081435 ~ 22173799 (-)
mxh LOC106612969 coding upstream 397041 22246578 ~ 22265501 (-)
LOC110503369 LOC106612967 coding upstream 612729 22462266 ~ 22676276 (-)
G1913624 NA non-coding downstream 50976 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 138838 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 139951 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 161921 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 179946 21665040 ~ 21665279 (-)
G1913661 NA non-coding upstream 28685 21878222 ~ 21879232 (-)
G1913793 NA non-coding upstream 222303 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 229758 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 299742 22149279 ~ 22149684 (-)
G1912470 NA other downstream 868989 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1383788 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2153712 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2353617 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2512000 19332841 ~ 19333225 (-)
G1913665 NA other upstream 14051 21863588 ~ 21864274 (-)
G1913663 NA other upstream 21716 21871253 ~ 21872149 (-)
G1915836 NA other upstream 1902306 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4313928 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4360879 26208892 ~ 26241410 (-)

Expression


Co-expression Network