Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110504027 |
| gene name | LOC106612972 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 21899621 ~ 21987496 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| GRAM domain-containing protein 1B-like isoform X15 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036961104.1 | False | 6671 | mRNA | 0.44 | 20 | 21899621 | 21930884 |
| XM_036961100.1 | False | 8157 | mRNA | 0.46 | 22 | 21899621 | 21987485 |
| XM_021582812.2 | False | 8147 | mRNA | 0.46 | 22 | 21899621 | 21987487 |
| XM_021582809.2 | False | 8173 | mRNA | 0.46 | 23 | 21899621 | 21987489 |
| XM_036961101.1 | False | 8151 | mRNA | 0.46 | 23 | 21899621 | 21987491 |
| XM_021582816.2 | False | 8113 | mRNA | 0.46 | 21 | 21899621 | 21987492 |
| XM_036961099.1 | False | 8175 | mRNA | 0.46 | 23 | 21899621 | 21987494 |
| XM_021582815.2 | False | 8128 | mRNA | 0.46 | 22 | 21899621 | 21987495 |
| XM_036961102.1 | False | 8153 | mRNA | 0.46 | 23 | 21899621 | 21987496 |
| TU2188537 | True | 4509 | lncRNA | 0.39 | 3 | 21899647 | 21905031 |
21,850,000
21,860,000
21,870,000
21,880,000
21,890,000
21,900,000
21,910,000
21,920,000
21,930,000
21,940,000
21,940,000
21,950,000
21,960,000
21,970,000
21,980,000
21,990,000
22,000,000
22,010,000
22,020,000
22,030,000
NC_048588.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110504025 | LOC106612974 | coding | downstream | 3386 | 21885499 ~ 21896235 (-) |
| LOC110504022 | NA | coding | downstream | 50084 | 21845225 ~ 21849537 (-) |
| polr2i | rpb9 | coding | downstream | 69298 | 21826850 ~ 21830323 (-) |
| pglyrp5 | polr2i | coding | downstream | 73312 | 21824919 ~ 21826309 (-) |
| foxg1c | LOC106613045 | coding | downstream | 76900 | 21819254 ~ 21822721 (-) |
| LOC110504029 | LOC106612970 | coding | upstream | 93939 | 22081435 ~ 22173799 (-) |
| mxh | LOC106612969 | coding | upstream | 259082 | 22246578 ~ 22265501 (-) |
| LOC110503369 | LOC106612967 | coding | upstream | 474770 | 22462266 ~ 22676276 (-) |
| LOC110504033 | LOC106612966 | coding | upstream | 1011561 | 22999057 ~ 23048741 (-) |
| LOC110504036 | LOC106581096 | coding | upstream | 1152471 | 23139967 ~ 23144967 (-) |
| G1913661 | NA | non-coding | downstream | 20389 | 21878222 ~ 21879232 (-) |
| G1913624 | NA | non-coding | downstream | 105372 | 21793627 ~ 21794249 (-) |
| G1913567 | NA | non-coding | downstream | 193234 | 21705625 ~ 21706387 (-) |
| G1913566 | NA | non-coding | downstream | 194347 | 21705041 ~ 21705274 (-) |
| G1913564 | LOC106612984 | non-coding | downstream | 216317 | 21669061 ~ 21683304 (-) |
| G1913793 | NA | non-coding | upstream | 84344 | 22071840 ~ 22072322 (-) |
| G1913752 | NA | non-coding | upstream | 91799 | 22079295 ~ 22080052 (-) |
| G1913828 | NA | non-coding | upstream | 161783 | 22149279 ~ 22149684 (-) |
| G1913968 | NA | non-coding | upstream | 380299 | 22367795 ~ 22368000 (-) |
| G1913969 | NA | non-coding | upstream | 380619 | 22368115 ~ 22368358 (-) |
| G1913663 | NA | other | downstream | 27472 | 21871253 ~ 21872149 (-) |
| G1913665 | NA | other | downstream | 35347 | 21863588 ~ 21864274 (-) |
| G1912470 | NA | other | downstream | 923385 | 20972679 ~ 20976236 (-) |
| G1911862 | NA | other | downstream | 1438184 | 20460668 ~ 20461437 (-) |
| G1910996 | NA | other | downstream | 2208108 | 19691066 ~ 19691513 (-) |
| G1915836 | NA | other | upstream | 1764347 | 23751843 ~ 23752463 (-) |
| LOC110504083 | NA | other | upstream | 4175969 | 26163462 ~ 26165289 (-) |
| LOC110503381 | LOC106613064 | other | upstream | 4222920 | 26208892 ~ 26241410 (-) |
| LOC110504098 | LOC106613118 | other | upstream | 4923288 | 26910083 ~ 26935725 (-) |
| G1919707 | NA | other | upstream | 5341954 | 27329450 ~ 27331899 (-) |
