LOC110504029 (LOC106612970)


Basic Information

Item Value
gene id LOC110504029
gene name LOC106612970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 22081435 ~ 22173799 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582822.2
GCATCCTCCAATAAATTGACCCTGCAACCCCCACTGCATAGCATGCCCTGACAGTCTGGCCACTGGCCAGGGTCCAAGCCACAAGCCCCACATACACAGCTGACGGAGCCTAGTGCAACTCAGACCCTGTCGTACAGCAAACAACCTGACAGCTAGtgctgCTGAGCCTGCTGACGGCCGGCGCCCAGACAGAAATGAAGAGAGTTGTCGGAGACAACACCACCCTGCCGTGCCACCATCAGTTCTGGCAATCCAATGTGCAGTTGCTTGACATTGAGTGGCTACTGCAGAAGCCCAACTCCAAGCAGAGAGTGATCATCACGTTTTTCGGGGGCCAGGTTTACACCAACGAGGTGACCAGCGGGACCAGTCGTCTGTCTTTCGCTGGGGACTACCTGAAAGGAGACGCCTCCCTGCTCCTCAGTGACTTACAGCTGACCGACTCTGGGGAGTACTACTGCAAGGTCAAGATGGGGGGAAAGTACCACTGGAGCCAGGTCAACCTCATAGTGCTGGTGAAGCCCTCTAAGCCACGATGCTGGATGGACGGCAGGCTGCTGGAGGGCAGTGATGTTAAACTGAGCTGCAAATCCAGTGACGGCTCAGACCCTATCAAATACAATTGGGAGAGGGTGCTGGATAAGGGAAAGAGTGTTGGGAACCTCCCCCTACTGGCACTGAGAGATCTGAAGAATCCAGAGATCGTTACCCTGCGGAACCTGACGAAGGACAGTACAGGTGTCTACAAGTGCACTGCCAGCAATGACGTTGGCGAGGAGAACTGCATCATCGAGGTCACCATGCAGTATGTTCGAGGGATGGGCGTGCTGGCAGGTGCCGTGGTGGGCGTCTCCTTTGGTGTTCTCCTCATCATCCTAATCATCTGGCTCGTCTTCcgcaagaaggagaagaagaggtatgaggaggaggagactccCAATGAGATCAGGGAGGATGCAGAGGCTCCCAAGGCCAAGCTGGTGAAGCCCAACTCTCTGTCCTCGTCCCGCTCTGGCAGCTCCCGCTCCGGGGCCTCCTCAACACAGTCCATGGTGCACAACACTGCCCCCCACGGGCACCGCCCTCGGCCCCCAGCGATAGCTGCCCTCAAGGAGAATGGACAGCCACCTGACTTCCCCCAGTCCCCCCCAGCATACACAACGGTGGTACCCCCCATCAAGACCCCTGAGCCCCCTGGCACCCCCAAATTCAACATCAACTCCAGGAAACATATCTCTGGGCCCACTCCCCCCACTCTCATGGTCCCTGCCCAGACCAAGGCCTTTCAAACTGTGTAGGATGGAGAAGAAAGTCCATCCTGGCTATGTTGATGTGTAAAACCCACCCCTTCAAAGACACAAACTCTTCCGTTAAACAACGAAATGCAAGTAGTAAAAGGATGTAATTAAGATAATCAATAATATAAACCCCAAAACTTTTAATGAATGCATACTTTAAAAGGGAAAATAAGAAATGCTTGCCCCCTACTgaataaaaaacaacaaaaacaaaaaaactgagaCAGAACACATTTTTGTTTGTCTCGTGGCTAAATAACTTATTTTTACACTTTTCTTTCTACTTTGAAGTCATGGGAAGCAATGAGCGGGCACAGCGCTGTGTGCGGTGAGGTGTAAGAAAAACCCAGAGTGGAGATTTTATGTATCAAATCAAAAGGACAGGAAGAGTGCAGAGAAAAAGGAAGAAAGAAGGAATTGGTTGAGAAAAGAGATCCAAAGTCTGCACCAGGTGCCGGTGGAGACACGCAGCTGACGACATGACGGAGGGATGAGGGCATGAAATGCTGAGAGAGAACCACGCCTCTTTATTTTGGCCTAGTGGTGTCTCTGACTCATCCAACCACACCACTCCCAACAGGCAGACACACCGGAGCATCCAGCCCCCACTACAACCACACACCCCTGGCTTTCTGACAGAGAGCATGCTGTGTGCCCTGTGAGGAGAGAAACCGCTAGATCAACCCTCCAGAACACAGGCAGCCGATGGCACCTTATTTggagaggacgggctcatagtaatggctggaatgaaatacatggaatggtatcgaacacgtcaaacacatggtttcattGTGTGATGCTATTAAAtgcactccattccagccattattatgagccgtcctcccctcagcagcctcctgtgctccAGACTCTGTGATGCTTTACGGGCTCCATGACGACATCTGAGACACATCATGTTCCATGGTCCTGACCCCATTCAGAGAACAGCTAATTTGCTTTTCTCAATAGGAGAAACTTTAGCCACATTCATAGGATGTAGCACTGACATGGTAGTCAGAGTTCTGATGAAACTTTTATTTTTCTCACCCCATCCTCTCTCAGCTCTGTGGATTGGTAATTCCAGTCCTCGGGGTCTAGAGTGCTGTCACACTGTTCCCcaatccctagcaaacacagctgattaaaccaATTTAATTCTAAACTGAACATCATGATTAGTTGataattggagtcaggtgtgttagctggggctggggcaaaagtgtgacaccaatcaggcccctgagGACTGGCGTTACCATCCCATATGGTACGGAAACTCCTCCCCAAAAACTGATGAATTGGGTGTTAACGTACAGAAAATAGAGACACATGACTGAATATACTGAATAATAAAAATAACTTTAAGACAAATGAGGTTTAATATCTATTTAATTTCAGGTTGTGGAGGGTGACAGACAGCTGTGTCTCAGCCTGAGGAAGTGCCACCAATCCCCAGGATGGGTCATCGTTGCTTTATTTACTCATTTATTTACCTCCACTGTTTTGCAATGTTACGGAAACCAAAACCTGTCAAAAAGTCAATGAATGTGTGTTGAACAAAGATGGTCACTACGGTTATTGTCTATGCTTTGTAAGGTACTGAATAGAAGGAAGTAAAACATAGTTAGAGAGACACAAATGACATTGAAGTTAATCCCCGAAATACTGTGGATGATTGAATAGAGGAAGGAGTATGATTCTAGGGACTATTGTACAGTGTGCATGGTTCCACCCCTGGTAGGTACTCTCCTTGGATCCACAACAACAGAGTGCCACTCGATTACTGTCTCATTGTTTTGATAGTTTCTCTGTACATTCTCTGTACATTGGCCAAGCTTTGGCATCAGCCATCCCCTTTGTTGTACATCTGTCTGACCCTGTGCAGTTTGAATGAAGTAGGCTATTTAGTGTGCCTTTGTAATCCCTATCCCTGTTGATGGTTTCTTTTTCTGTCCTTATCATGAATGCACATGTGGTTTGAGTTATGTGTTGATCCAGCTTTGGGAATCTACTGCCAAAACACAGTGAGACAGGGGCATTAACCAAACCTGTGGGATTATATGTATCTGATCAGAGTCCATCTGCGCTCTTTTAAGGTCCTTACTACTGAAAAGGGTCTGTTGCAGGTGCGTAGGAGTCAAAGTAACAATACTGGACGAGATAGAGACCTGCACCTTGTCGAAAAAAGAATAGATCCAAAACTTAGGCTTGAATGCAAAATCAAGATGTTTATTGAAACATCATGGTGTCCAAAGAATATAGCATAGTGCATAAATAAAATgtgaaaacaaaacacaaatgtTTCTTCCTCAGGCCATCAGTGGACATTTTCAgcacacacctggtttctattTCAATGATACTTGCATGTCACATGGGCAAGAAAATACATCAGAAAATCTATAAAGTAGTACCTAGTACAATAGAATGCATGATCTAGATTATATACAATTGCGGACAGAGAGAAATCATCAATTATTACTTATAGATGTACAATGTGAACATTTCCTCAAAATAAATAACACAGGATTGTAAGAGTGGGAGCTAGAGACACCACTAGCTGGGGGTATCGTACACAAATAGTTGCAGAAAACACTTCAATAACAATTATTCATTCATGCCTAAAATACAATATGACGTTAGAAGACCTGCATGTGGATACTGTTTGATAGTGTATTGTTTTCCAGTGGCAGAGCTGTTGAATACGCTCACTTTGTAATAGGTATCCTTACATGCTGCACAACTACGACAGAGGTAGAAGCCAGTCACCTGGTGTCAGTCCCTGACATTCCTGGCCCTGTAGTGTGAAAAGAGAGGAGGGTCAGAGAAAATCTTTTGGCAAGCAGGATCAGCAATAAGCACATTCCAATGCTACTTAATAGCTCCCTTGATGTCATCACTCCCTTGATGTCATCACTCACAGAACAATATGTAACAGTACAGACATGaatggtttttattttattaatttttgTATTACTTTTATCccttctagtagagagagagtagaggtctCATCAATGGTACGTACTCTACTGAGAGCACTAGAGGCATGTAGGCTTTGTATACAAAGTAGTGGACAAAGACCCTGACTGAAGGCGTACAAGGGTATCCCGGAAGAATATCTCGCTATGACTAATCTCTGCTGTAAACTAGATCATATGTAACCCAATCACAATTCAGAATGTGTACATCTCCATAATGAGACAACATTCCATGCCAAGGGAATGATGTACATTATAAAACTTattcaggatcggtgggtcccctgcgggacaGTTGAGTTAACgaaggctaatgtgattagcatgaggttgtaagtaacaagtaaacatagctgatattgtctgaaagcttacattcttgttaatctaacagcactgtttacagtagctattacattgaaataataccatgctattgtttgaggagagtgtacAGTTTTGAACATTAAAAGTTATTAAtgaacaaattaggcacatttgggcagtcttgatacaacataaTGAAAAtgaatgcaatggttcattggaccaGTCTAAAACATTCACATACACtggtgccatctagtggccaaaatctaaattccacctgggctggaataatacattatggcctttctcttccatttaaaaaatgatggtacaaaaaaatacaaaactttttttatttgtattatctttt
>XM_021582821.2
AAATGCCtttgtggtcagatgaaacaatgTGAGCGCTTCAGGCTCTAGAGGTCTCCATCCAGCATGCAGCAACATCCACCTATCGGAATTCTTCCCCTCACTGTCTAGTGCAGCGGACAGCGGtataggaaggagaggagaacgctCAGCCACGGAGACAGAGGGAACCTGAGACACGCACGCGTCCCGAACGACACAGAAAGAAAGGGAACTTTGATTTGACGCGTGGCCGATAATGATCAAATTGACGACACGAAAGAGCTGCATTCCTTAGTGAAGGGAATAATTGACATTTCGAGTATTCCAATATATAATGTCCTTGGATCCCTGCTCATTGTAGATTATATTTAATTGCTCTCTCCTATTTCTGAAATCTGTATTTATTGTGATTGTACACTTCGTTCACCCGCATGAATTTTAAGGCAGTCTGAACGCATTGTTTCCAGTTTCGTCGCATGGGATTTCCAGTCGTGTCGGGTGCGGTGATGTCTGCAACATTTCGCTCTTTGTTTCTGGtgctgCTGAGCCTGCTGACGGCCGGCGCCCAGACAGAAATGAAGAGAGTTGTCGGAGACAACACCACCCTGCCGTGCCACCATCAGTTCTGGCAATCCAATGTGCAGTTGCTTGACATTGAGTGGCTACTGCAGAAGCCCAACTCCAAGCAGAGAGTGATCATCACGTTTTTCGGGGGCCAGGTTTACACCAACGAGGTGACCAGCGGGACCAGTCGTCTGTCTTTCGCTGGGGACTACCTGAAAGGAGACGCCTCCCTGCTCCTCAGTGACTTACAGCTGACCGACTCTGGGGAGTACTACTGCAAGGTCAAGATGGGGGGAAAGTACCACTGGAGCCAGGTCAACCTCATAGTGCTGGTGAAGCCCTCTAAGCCACGATGCTGGATGGACGGCAGGCTGCTGGAGGGCAGTGATGTTAAACTGAGCTGCAAATCCAGTGACGGCTCAGACCCTATCAAATACAATTGGGAGAGGGTGCTGGATAAGGGAAAGAGTGTTGGGAACCTCCCCCTACTGGCACTGAGAGATCTGAAGAATCCAGAGATCGTTACCCTGCGGAACCTGACGAAGGACAGTACAGGTGTCTACAAGTGCACTGCCAGCAATGACGTTGGCGAGGAGAACTGCATCATCGAGGTCACCATGCAGTATGTTCGAGGGATGGGCGTGCTGGCAGGTGCCGTGGTGGGCGTCTCCTTTGGTGTTCTCCTCATCATCCTAATCATCTGGCTCGTCTTCcgcaagaaggagaagaagaggtatgaggaggaggagactccCAATGAGATCAGGGAGGATGCAGAGGCTCCCAAGGCCAAGCTGGTGAAGCCCAACTCTCTGTCCTCGTCCCGCTCTGGCAGCTCCCGCTCCGGGGCCTCCTCAACACAGTCCATGGTGCACAACACTGCCCCCCACGGGCACCGCCCTCGGCCCCCAGCGATAGCTGCCCTCAAGGAGAATGGACAGCCACCTGACTTCCCCCAGTCCCCCCCAGCATACACAACGGTGGTACCCCCCATCAAGACCCCTGAGCCCCCTGGCACCCCCAAATTCAACATCAACTCCAGGAAACATATCTCTGGGCCCACTCCCCCCACTCTCATGGTCCCTGCCCAGACCAAGGCCTTTCAAACTGTGTAGGATGGAGAAGAAAGTCCATCCTGGCTATGTTGATGTGTAAAACCCACCCCTTCAAAGACACAAACTCTTCCGTTAAACAACGAAATGCAAGTAGTAAAAGGATGTAATTAAGATAATCAATAATATAAACCCCAAAACTTTTAATGAATGCATACTTTAAAAGGGAAAATAAGAAATGCTTGCCCCCTACTgaataaaaaacaacaaaaacaaaaaaactgagaCAGAACACATTTTTGTTTGTCTCGTGGCTAAATAACTTATTTTTACACTTTTCTTTCTACTTTGAAGTCATGGGAAGCAATGAGCGGGCACAGCGCTGTGTGCGGTGAGGTGTAAGAAAAACCCAGAGTGGAGATTTTATGTATCAAATCAAAAGGACAGGAAGAGTGCAGAGAAAAAGGAAGAAAGAAGGAATTGGTTGAGAAAAGAGATCCAAAGTCTGCACCAGGTGCCGGTGGAGACACGCAGCTGACGACATGACGGAGGGATGAGGGCATGAAATGCTGAGAGAGAACCACGCCTCTTTATTTTGGCCTAGTGGTGTCTCTGACTCATCCAACCACACCACTCCCAACAGGCAGACACACCGGAGCATCCAGCCCCCACTACAACCACACACCCCTGGCTTTCTGACAGAGAGCATGCTGTGTGCCCTGTGAGGAGAGAAACCGCTAGATCAACCCTCCAGAACACAGGCAGCCGATGGCACCTTATTTggagaggacgggctcatagtaatggctggaatgaaatacatggaatggtatcgaacacgtcaaacacatggtttcattGTGTGATGCTATTAAAtgcactccattccagccattattatgagccgtcctcccctcagcagcctcctgtgctccAGACTCTGTGATGCTTTACGGGCTCCATGACGACATCTGAGACACATCATGTTCCATGGTCCTGACCCCATTCAGAGAACAGCTAATTTGCTTTTCTCAATAGGAGAAACTTTAGCCACATTCATAGGATGTAGCACTGACATGGTAGTCAGAGTTCTGATGAAACTTTTATTTTTCTCACCCCATCCTCTCTCAGCTCTGTGGATTGGTAATTCCAGTCCTCGGGGTCTAGAGTGCTGTCACACTGTTCCCcaatccctagcaaacacagctgattaaaccaATTTAATTCTAAACTGAACATCATGATTAGTTGataattggagtcaggtgtgttagctggggctggggcaaaagtgtgacaccaatcaggcccctgagGACTGGCGTTACCATCCCATATGGTACGGAAACTCCTCCCCAAAAACTGATGAATTGGGTGTTAACGTACAGAAAATAGAGACACATGACTGAATATACTGAATAATAAAAATAACTTTAAGACAAATGAGGTTTAATATCTATTTAATTTCAGGTTGTGGAGGGTGACAGACAGCTGTGTCTCAGCCTGAGGAAGTGCCACCAATCCCCAGGATGGGTCATCGTTGCTTTATTTACTCATTTATTTACCTCCACTGTTTTGCAATGTTACGGAAACCAAAACCTGTCAAAAAGTCAATGAATGTGTGTTGAACAAAGATGGTCACTACGGTTATTGTCTATGCTTTGTAAGGTACTGAATAGAAGGAAGTAAAACATAGTTAGAGAGACACAAATGACATTGAAGTTAATCCCCGAAATACTGTGGATGATTGAATAGAGGAAGGAGTATGATTCTAGGGACTATTGTACAGTGTGCATGGTTCCACCCCTGGTAGGTACTCTCCTTGGATCCACAACAACAGAGTGCCACTCGATTACTGTCTCATTGTTTTGATAGTTTCTCTGTACATTCTCTGTACATTGGCCAAGCTTTGGCATCAGCCATCCCCTTTGTTGTACATCTGTCTGACCCTGTGCAGTTTGAATGAAGTAGGCTATTTAGTGTGCCTTTGTAATCCCTATCCCTGTTGATGGTTTCTTTTTCTGTCCTTATCATGAATGCACATGTGGTTTGAGTTATGTGTTGATCCAGCTTTGGGAATCTACTGCCAAAACACAGTGAGACAGGGGCATTAACCAAACCTGTGGGATTATATGTATCTGATCAGAGTCCATCTGCGCTCTTTTAAGGTCCTTACTACTGAAAAGGGTCTGTTGCAGGTGCGTAGGAGTCAAAGTAACAATACTGGACGAGATAGAGACCTGCACCTTGTCGAAAAAAGAATAGATCCAAAACTTAGGCTTGAATGCAAAATCAAGATGTTTATTGAAACATCATGGTGTCCAAAGAATATAGCATAGTGCATAAATAAAATgtgaaaacaaaacacaaatgtTTCTTCCTCAGGCCATCAGTGGACATTTTCAgcacacacctggtttctattTCAATGATACTTGCATGTCACATGGGCAAGAAAATACATCAGAAAATCTATAAAGTAGTACCTAGTACAATAGAATGCATGATCTAGATTATATACAATTGCGGACAGAGAGAAATCATCAATTATTACTTATAGATGTACAATGTGAACATTTCCTCAAAATAAATAACACAGGATTGTAAGAGTGGGAGCTAGAGACACCACTAGCTGGGGGTATCGTACACAAATAGTTGCAGAAAACACTTCAATAACAATTATTCATTCATGCCTAAAATACAATATGACGTTAGAAGACCTGCATGTGGATACTGTTTGATAGTGTATTGTTTTCCAGTGGCAGAGCTGTTGAATACGCTCACTTTGTAATAGGTATCCTTACATGCTGCACAACTACGACAGAGGTAGAAGCCAGTCACCTGGTGTCAGTCCCTGACATTCCTGGCCCTGTAGTGTGAAAAGAGAGGAGGGTCAGAGAAAATCTTTTGGCAAGCAGGATCAGCAATAAGCACATTCCAATGCTACTTAATAGCTCCCTTGATGTCATCACTCCCTTGATGTCATCACTCACAGAACAATATGTAACAGTACAGACATGaatggtttttattttattaatttttgTATTACTTTTATCccttctagtagagagagagtagaggtctCATCAATGGTACGTACTCTACTGAGAGCACTAGAGGCATGTAGGCTTTGTATACAAAGTAGTGGACAAAGACCCTGACTGAAGGCGTACAAGGGTATCCCGGAAGAATATCTCGCTATGACTAATCTCTGCTGTAAACTAGATCATATGTAACCCAATCACAATTCAGAATGTGTACATCTCCATAATGAGACAACATTCCATGCCAAGGGAATGATGTACATTATAAAACTTattcaggatcggtgggtcccctgcgggacaGTTGAGTTAACgaaggctaatgtgattagcatgaggttgtaagtaacaagtaaacatagctgatattgtctgaaagcttacattcttgttaatctaacagcactgtttacagtagctattacattgaaataataccatgctattgtttgaggagagtgtacAGTTTTGAACATTAAAAGTTATTAAtgaacaaattaggcacatttgggcagtcttgatacaacataaTGAAAAtgaatgcaatggttcattggaccaGTCTAAAACATTCACATACACtggtgccatctagtggccaaaatctaaattccacctgggctggaataatacattatggcctttctcttccatttaaaaaatgatggtacaaaaaaatacaaaactttttttatttgtattatctttt

Function

NR:

description
CXADR-like membrane protein isoform X1

GO: NA

KEGG:

id description
K06789 ASAM, CLMP; adipocyte-specific adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582822.2 False 4991 mRNA 0.45 7 22081435 22097870
XM_021582821.2 True 5351 mRNA 0.45 7 22081435 22173799

Neighbor

gene id symbol gene type direction distance location
LOC110504027 LOC106612972 coding downstream 93939 21899621 ~ 21987496 (-)
LOC110504025 LOC106612974 coding downstream 185200 21885499 ~ 21896235 (-)
LOC110504022 NA coding downstream 231898 21845225 ~ 21849537 (-)
polr2i rpb9 coding downstream 251112 21826850 ~ 21830323 (-)
pglyrp5 polr2i coding downstream 255126 21824919 ~ 21826309 (-)
mxh LOC106612969 coding upstream 72779 22246578 ~ 22265501 (-)
LOC110503369 LOC106612967 coding upstream 288467 22462266 ~ 22676276 (-)
LOC110504033 LOC106612966 coding upstream 825258 22999057 ~ 23048741 (-)
LOC110504036 LOC106581096 coding upstream 966168 23139967 ~ 23144967 (-)
LOC110504038 LOC106612963 coding upstream 1052998 23226797 ~ 23295189 (-)
G1913752 NA non-coding downstream 1383 22079295 ~ 22080052 (-)
G1913793 NA non-coding downstream 9113 22071840 ~ 22072322 (-)
G1913661 NA non-coding downstream 202203 21878222 ~ 21879232 (-)
G1913624 NA non-coding downstream 287186 21793627 ~ 21794249 (-)
G1913968 NA non-coding upstream 193996 22367795 ~ 22368000 (-)
G1913969 NA non-coding upstream 194316 22368115 ~ 22368358 (-)
G1913971 NA non-coding upstream 194791 22368590 ~ 22369043 (-)
G1914226 NA non-coding upstream 233491 22407290 ~ 22407625 (-)
G1914243 NA non-coding upstream 284201 22458000 ~ 22458931 (-)
G1913663 NA other downstream 209286 21871253 ~ 21872149 (-)
G1913665 NA other downstream 217161 21863588 ~ 21864274 (-)
G1912470 NA other downstream 1105199 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1619998 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2389922 19691066 ~ 19691513 (-)
G1915836 NA other upstream 1578044 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 3989666 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4036617 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 4736985 26910083 ~ 26935725 (-)
G1919707 NA other upstream 5155651 27329450 ~ 27331899 (-)

Expression


Co-expression Network