LOC110504038 (LOC106612963)


Basic Information

Item Value
gene id LOC110504038
gene name LOC106612963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23226797 ~ 23295189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582839.2
gggccatctgtgatgtaactgggaccctttggagtgccaacagaagaagttcttcaaagGGAGGAACCCAGAGTCAACATATCCACCCTTTAAAGGACATGGAGAAAGGGTAACATCATGCTCAGTACCGAGATGAGAGGGCGAAGGAGCATATGAAGATGTCCCTAAAGACTGCTAAAAGATGGTGCTTTAGACTGTTCGCTGTTGTACTGTTCTTAGTCTCCTACTACTGCTCCCACGTCTTCCTTCAGAGTTATGGAGGCACCAGCAAGTCTCCTTTGACTCCTAGCAAGTCACTGTGTGGCGGCTGGCTAAAGCAGAAGAAGTGGGAGAGCCTCAATTTTAACATTAGCAGACAAACAGAGCTCTTCTTCAAACTGGATGATTTCTTCTGGCGACAACATCAGTCCACATTAGCGTTGCCCTACGGTATTAAAGGAAGTGaGTTACTGCTGCTGAGAGTGTTAGCCATTATTGCCAATTACAAAATGCCGGCCAGCATTGATCGTCTAGACTGCAGAACATGTGCAGTCATAGGAAATGGGTTTGCCATTAAAAACAGCTCCTTGGGGGGCGTCATCAACGAGTATGATGTGGTGATCCGGCTGAATGATGCCCCTGTCAGAGGTTATGAGGATGACGTGGGGAACAAGACCACTATGCGTCTCTTCTACCCTGAGTCGGCCTCCTACAACCCCAGCATGCACAACGACCCCGACACCCTTATGGTCCTAGTGCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAGATCCTGTACGACGAGAAGAGGgtgaggAAAGGTTTCTGGAAGCCCCCTCCACAGATCTGGCTGGGCAGGACCAGTCGCATCCGGGTGCTGGACCCTCACTTCCTGCATGGGACGGCCAGCAGTCTGCTACAAATCCCACTTCAACCAAAGAGCAAACAGAAACCGGTACACCCCACTACAGGGATCCTTGCCGTGTTCGTGGCACTCAACTACTGTGATGTGGTCCACATAGCTGGGTTTGGATATCCAGCATCCAAAAACCAGAAGCATCCTATACACTACTATGGATATGACACTATGAAATCCATGAAGGATTCCTACCATGACCTTACCCACGAAGCAGAAGCCTTAAAAAAACTAGAGGATTCGGGGGCTATCCTGTACTTACACCCTcactcctgacacacacacacacgcacgggcaCGGCCCAGAAACACCCCCTGTCCCTGACCTAGGAACTTCATCAAAATCTGCAAGGAATTTTCACTGCACTGCTAATACATATAAATGTTTCTTCAGATCTACACATGCCTAGACGGTAGAGGCTAGTGGGTGTTTTATGGACTAGGCTACTCACAGATGGCAGTTGTGGACTCTGCTGACAATATTGTCCATACAGTCCAAAcattaaaaataacaaaataatttcatttttttttcctGAGTTCTGATTTTAAttaacttaaaaatatatattgtctTTGAAATGGTACCACTGGATATTTTATtgtatgtaatacatttttattcAAATTAAATCTAAAGGAAAATATCA
>XM_021582840.2
TTTGCTATGGAAAATGTATTTACTTCTCAAATGTGGTATGTGGCCATATGTTTTCAAGTCGTGTAGGACTAATCAATGAAAGGGATACCACGGCGCCTCCCACTCAGTGCATAACAACGCCTATTTCTTGCATCTCAAAGACAGCGTTTAACGTTACTAACGTTAGTTTACTTGCCTATGATATTCTGTTTGTGCTTCGGATTGCCAAATGTGTTAACTACATTGCTGGGTAACATCATGCTCAGTACCGAGATGAGAGGGCGAAGGAGCATATGAAGATGTCCCTAAAGACTGCTAAAAGATGGTGCTTTAGACTGTTCGCTGTTGTACTGTTCTTAGTCTCCTACTACTGCTCCCACGTCTTCCTTCAGAGTTATGGAGGCACCAGCAAGTCTCCTTTGACTCCTAGCAAGTCACTGTGTGGCGGCTGGCTAAAGCAGAAGAAGTGGGAGAGCCTCAATTTTAACATTAGCAGACAAACAGAGCTCTTCTTCAAACTGGATGATTTCTTCTGGCGACAACATCAGTCCACATTAGCGTTGCCCTACGGTATTAAAGGAAGTGaGTTACTGCTGCTGAGAGTGTTAGCCATTATTGCCAATTACAAAATGCCGGCCAGCATTGATCGTCTAGACTGCAGAACATGTGCAGTCATAGGAAATGGGTTTGCCATTAAAAACAGCTCCTTGGGGGGCGTCATCAACGAGTATGATGTGGTGATCCGGCTGAATGATGCCCCTGTCAGAGGTTATGAGGATGACGTGGGGAACAAGACCACTATGCGTCTCTTCTACCCTGAGTCGGCCTCCTACAACCCCAGCATGCACAACGACCCCGACACCCTTATGGTCCTAGTGCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAGATCCTGTACGACGAGAAGAGGgtgaggAAAGGTTTCTGGAAGCCCCCTCCACAGATCTGGCTGGGCAGGACCAGTCGCATCCGGGTGCTGGACCCTCACTTCCTGCATGGGACGGCCAGCAGTCTGCTACAAATCCCACTTCAACCAAAGAGCAAACAGAAACCGGTACACCCCACTACAGGGATCCTTGCCGTGTTCGTGGCACTCAACTACTGTGATGTGGTCCACATAGCTGGGTTTGGATATCCAGCATCCAAAAACCAGAAGCATCCTATACACTACTATGGATATGACACTATGAAATCCATGAAGGATTCCTACCATGACCTTACCCACGAAGCAGAAGCCTTAAAAAAACTAGAGGATTCGGGGGCTATCCTGTACTTACACCCTcactcctgacacacacacacacgcacgggcaCGGCCCAGAAACACCCCCTGTCCCTGACCTAGGAACTTCATCAAAATCTGCAAGGAATTTTCACTGCACTGCTAATACATATAAATGTTTCTTCAGATCTACACATGCCTAGACGGTAGAGGCTAGTGGGTGTTTTATGGACTAGGCTACTCACAGATGGCAGTTGTGGACTCTGCTGACAATATTGTCCATACAGTCCAAAcattaaaaataacaaaataatttcatttttttttcctGAGTTCTGATTTTAAttaacttaaaaatatatattgtctTTGAAATGGTACCACTGGATATTTTATtgtatgtaatacatttttattcAAATTAAATCTAAAGGAAAATATCA
>XM_036961429.1
TGCCTGCGGAGATGGCAGCCAGGGAGGAACCCAGAGTCAACATATCCACCCTTTAAAGGACATGGAGAAAGGGTAACATCATGCTCAGTACCGAGATGAGAGGGCGAAGGAGCATATGAAGATGTCCCTAAAGACTGCTAAAAGATGGTGCTTTAGACTGTTCGCTGTTGTACTGTTCTTAGTCTCCTACTACTGCTCCCACGTCTTCCTTCAGAGTTATGGAGGCACCAGCAAGTCTCCTTTGACTCCTAGCAAGTCACTGTGTGGCGGCTGGCTAAAGCAGAAGAAGTGGGAGAGCCTCAATTTTAACATTAGCAGACAAACAGAGCTCTTCTTCAAACTGGATGATTTCTTCTGGCGACAACATCAGTCCACATTAGCGTTGCCCTACGGTATTAAAGGAAGTGaGTTACTGCTGCTGAGAGTGTTAGCCATTATTGCCAATTACAAAATGCCGGCCAGCATTGATCGTCTAGACTGCAGAACATGTGCAGTCATAGGAAATGGGTTTGCCATTAAAAACAGCTCCTTGGGGGGCGTCATCAACGAGTATGATGTGGTGATCCGGCTGAATGATGCCCCTGTCAGAGGTTATGAGGATGACGTGGGGAACAAGACCACTATGCGTCTCTTCTACCCTGAGTCGGCCTCCTACAACCCCAGCATGCACAACGACCCCGACACCCTTATGGTCCTAGTGCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAGATCCTGTACGACGAGAAGAGGgtgaggAAAGGTTTCTGGAAGCCCCCTCCACAGATCTGGCTGGGCAGGACCAGTCGCATCCGGGTGCTGGACCCTCACTTCCTGCATGGGACGGCCAGCAGTCTGCTACAAATCCCACTTCAACCAAAGAGCAAACAGAAACCGGTACACCCCACTACAGGGATCCTTGCCGTGTTCGTGGCACTCAACTACTGTGATGTGGTCCACATAGCTGGGTTTGGATATCCAGCATCCAAAAACCAGAAGCATCCTATACACTACTATGGATATGACACTATGAAATCCATGAAGGATTCCTACCATGACCTTACCCACGAAGCAGAAGCCTTAAAAAAACTAGAGGATTCGGGGGCTATCCTGTACTTACACCCTcactcctgacacacacacacacgcacgggcaCGGCCCAGAAACACCCCCTGTCCCTGACCTAGGAACTTCATCAAAATCTGCAAGGAATTTTCACTGCACTGCTAATACATATAAATGTTTCTTCAGATCTACACATGCCTAGACGGTAGAGGCTAGTGGGTGTTTTATGGACTAGGCTACTCACAGATGGCAGTTGTGGACTCTGCTGACAATATTGTCCATACAGTCCAAAcattaaaaataacaaaataatttcatttttttttcctGAGTTCTGATTTTAAttaacttaaaaatatatattgtctTTGAAATGGTACCACTGGATATTTTATtgtatgtaatacatttttattcAAATTAAATCTAAAGGAAAATATCA
>XM_021582838.2
attttgaaaAAGGGTACGCGTTGTACTGATTTACGTTCCAATGGACCGTGCAATCTGCCTGCGGAGATGGCAGCCAGGTAGCTTATTGCCAACCAATTATTATTTTGCTATGGAAAATGTATTTACTTCTCAAATGTGGTATGTGGCCATATGTTTTCAAGTCGTGTAGGACTAATCAATGAAAGGGATACCACGGCGCCTCCCACTCAGTGCATAACAACGCCTATTTCTTGCATCTCAAAGACAGCGTTTAACGTTACTAACGTTAGTTTACTTGCCTATGATATTCTGTTTGTGCTTCGGATTGCCAAATGTGTTAACTACATTGCTGGGAGGAACCCAGAGTCAACATATCCACCCTTTAAAGGACATGGAGAAAGGGTAACATCATGCTCAGTACCGAGATGAGAGGGCGAAGGAGCATATGAAGATGTCCCTAAAGACTGCTAAAAGATGGTGCTTTAGACTGTTCGCTGTTGTACTGTTCTTAGTCTCCTACTACTGCTCCCACGTCTTCCTTCAGAGTTATGGAGGCACCAGCAAGTCTCCTTTGACTCCTAGCAAGTCACTGTGTGGCGGCTGGCTAAAGCAGAAGAAGTGGGAGAGCCTCAATTTTAACATTAGCAGACAAACAGAGCTCTTCTTCAAACTGGATGATTTCTTCTGGCGACAACATCAGTCCACATTAGCGTTGCCCTACGGTATTAAAGGAAGTGaGTTACTGCTGCTGAGAGTGTTAGCCATTATTGCCAATTACAAAATGCCGGCCAGCATTGATCGTCTAGACTGCAGAACATGTGCAGTCATAGGAAATGGGTTTGCCATTAAAAACAGCTCCTTGGGGGGCGTCATCAACGAGTATGATGTGGTGATCCGGCTGAATGATGCCCCTGTCAGAGGTTATGAGGATGACGTGGGGAACAAGACCACTATGCGTCTCTTCTACCCTGAGTCGGCCTCCTACAACCCCAGCATGCACAACGACCCCGACACCCTTATGGTCCTAGTGCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAGATCCTGTACGACGAGAAGAGGgtgaggAAAGGTTTCTGGAAGCCCCCTCCACAGATCTGGCTGGGCAGGACCAGTCGCATCCGGGTGCTGGACCCTCACTTCCTGCATGGGACGGCCAGCAGTCTGCTACAAATCCCACTTCAACCAAAGAGCAAACAGAAACCGGTACACCCCACTACAGGGATCCTTGCCGTGTTCGTGGCACTCAACTACTGTGATGTGGTCCACATAGCTGGGTTTGGATATCCAGCATCCAAAAACCAGAAGCATCCTATACACTACTATGGATATGACACTATGAAATCCATGAAGGATTCCTACCATGACCTTACCCACGAAGCAGAAGCCTTAAAAAAACTAGAGGATTCGGGGGCTATCCTGTACTTACACCCTcactcctgacacacacacacacgcacgggcaCGGCCCAGAAACACCCCCTGTCCCTGACCTAGGAACTTCATCAAAATCTGCAAGGAATTTTCACTGCACTGCTAATACATATAAATGTTTCTTCAGATCTACACATGCCTAGACGGTAGAGGCTAGTGGGTGTTTTATGGACTAGGCTACTCACAGATGGCAGTTGTGGACTCTGCTGACAATATTGTCCATACAGTCCAAAcattaaaaataacaaaataatttcatttttttttcctGAGTTCTGATTTTAAttaacttaaaaatatatattgtctTTGAAATGGTACCACTGGATATTTTATtgtatgtaatacatttttattcAAATTAAATCTAAAGGAAAATATCA
>XM_021582841.2
attttgaaaAAGGGTACGCGTTGTACTGATTTACGTTCCAATGGACCGTGCAATCTGCCTGCGGAGATGGCAGCCAGGTAGCTTATTGCCAACCAATTATTATTTTGCTATGGAAAATGTATTTACTTCTCAAATGTGGTATGTGGCCATATGTTTTCAAGTCGTGTAGGACTAATCAATGAAAGGGATACCACGGCGCCTCCCACTCAGTGCATAACAACGCCTATTTCTTGCATCTCAAAGACAGCGTTTAACGTTACTAACGTTAGTTTACTTGCCTATGATATTCTGTTTGTGCTTCGGATTGCCAAATGTGTTAACTACATTGCTGGGAGGAACCCAGAGTCAACATATCCACCCTTTAAAGGACATGGAGAAAGGGTAACATCATGCTCAGTACCGAGATGAGAGGGCGAAGGAGCATATGAAGATGTCCCTAAAGACTGCTAAAAGATGGTGCTTTAGACTGTTCGCTGTTGTACTGTTCTTAGTCTCCTACTACTGCTCCCACGTCTTCCTTCAGAGTTATGGAGGCACCAGCAAGTCTCCTTTGACTCCTAGCAAGTCACTGTGTGGCGGCTGGCTAAAGCAGAAGAAGTGGGAGAGCCTCAATTTTAACATTAGCAGACAAACAGAGCTCTTCTTCAAACTGGATGATTTCTTCTGGCGACAACATCAGTCCACATTAGCGTTGCCCTACGGTATTAAAGGAAGTGaGTTACTGCTGCTGAGAGTGTTAGCCATTATTGCCAATTACAAAATGCCGGCCAGCATTGATCGTCTAGACTGCAGAACATGTGCAGTCATAGGAAATGGGTTTGCCATTAAAAACAGCTCCTTGGGGGGCGTCATCAACGAGTATGATGTGGTGATCCGGCTGAATGATGCCCCTGTCAGAGGTTATGAGGATGACGTGGGGAACAAGACCACTATGCGTCTCTTCTACCCTGAGTCGGCCTCCTACAACCCCAGCATGCACAACGACCCCGACACCCTTATGGTCCTAGTGCCTTTCAAACAGCAGGACCTCCGCTGGCTCAAAGAGATCCTGTACGACGAGAAGAGGgtgaggAAAGGTTTCTGGAAGCCCCCTCCACAGATCTGGCTGGGCAGGACCAGTCGCATCCGGGTGCTGGACCCTCACTTCCTGCATGGGACGGCCAGCAGTCTGCTACAAATCCCACTTCAACCAAAGAGCAAACAGCGAGCCCCTGTGTCAGAGACTGAGGCTGTGCACTCTTTGGACTGCTGAAATGCAAACACAACTGGCTGGTGTCTGTGCCGAGGGAACAGTGGGAAAGAAGGGGTCCTGCAGGCGATCAGCGGGGCAGCCCGAGCATAGCACTCCTCCATCTGCGTGGCCCTACAGGCAAGATGAGCTCAACCTTGGCTGGCTGTctcctggctggctgggtgtctgGCTGGAGGGCgtaggctgtttactctgagcgagaacaggaacaggaaccaTGCCGAGCACTCGATCCTGGCCCCTTTGccctcattcccctctccccTGTCACTTTCCAGGGTCACGGGCCCGACCGCAGCCCCACAACCCCGATGCCAAACTCTCACCCCCTCCCTGTGGCTGCCATGTTGGCAGTCATCCACATGCCCTGTGagaaggcagcagcagcaggctggTTACAATACAGAGGCTGACTGAGCTGAGGAGAGCTAGAGGGCTAACTAATGCCCCTGTCAGTCAGACAGCCCCCACCGCCACCCCCTTCCAAAACAAAGGTCCGACTCCCACCAATCTGGTCTGCTTGGCGAACAGCAGTGACAATATTCACCTCACCAAGGCTCCATGGGCCAATGTCCAAACTATGCGAGGCACTACAGAAGTTGGAGCGCTCGGTGACCGACCACATGAGACTAATGCACACAGAATGTCAGATTTAGCCGAGCCAGGCTCAGGAAGAAAAGGCACTTATGCTAAGTGCATTAGGAACCAGGTTTGGAGGAATGTCCCATACAGtgtgatgaagagaggagaagcacAGGTTTGAGAACTTGGTTTCTCCAGTTTCTCTCTCCTTAGGGCACGAGTAATGGCTGTCCAGGTCAGACAGCATGCTTGTAAAGCCCTGCaggactcactgactgactcactgactcactcactcactcactcactcactcactcactcactcactcactcacagacatTTACCTTGGAAAGGCTCCTGCACTCAGTATTGGTCTGCCATTTTGAAGGTTTTATgtattgttgttttatttttattttatttggctgATTTATACTGCAGACCCACAGCACCTCAGTAGGGTTCTATTGGAAGGAATTGAGAAAGCAGTAGGCGGGAATAATGTGCCTGAACAAGAAGCTTCCTTGGAAATGGTGGGTTGTTGAGTAAACCAAGGTTAATGATTACATGGAACAGATAAGGGAGAGtcgggtaagttgagccaaagggatAAGTTTAGTCACCCCATCATTtcagtctgtgaaggaagaaaccacatggaaaaagtggtaaacaaCTTAGGGCCAAAAAACGGActttcaccaagtcaaattaatttattgtgttagaggtttcacgatgcttgtatctaaaccaaagtagatactTTTAAGATTGTTCTTAAAGGCAATATCtcttcaatcaaatcaaatgctatttgtcaaatgcgccgaata

Function

NR:

description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582839.2 False 1549 mRNA 0.46 12 23226797 23288842
XM_021582840.2 False 1669 mRNA 0.45 11 23226797 23295086
XM_036961429.1 False 1512 mRNA 0.46 12 23226797 23295134
XM_021582838.2 False 1821 mRNA 0.45 12 23226797 23295189
XM_021582841.2 True 2672 mRNA 0.49 11 23232259 23295189

Neighbor

gene id symbol gene type direction distance location
LOC110504036 LOC106581096 coding downstream 81830 23139967 ~ 23144967 (-)
LOC110504033 LOC106612966 coding downstream 178056 22999057 ~ 23048741 (-)
LOC110503369 LOC106612967 coding downstream 550521 22462266 ~ 22676276 (-)
mxh LOC106612969 coding downstream 961296 22246578 ~ 22265501 (-)
LOC110504029 LOC106612970 coding downstream 1052998 22081435 ~ 22173799 (-)
LOC110504040 LOC106612962 coding upstream 34930 23330119 ~ 23341771 (-)
LOC110504042 LOC106612961 coding upstream 56923 23352112 ~ 23358660 (-)
glb1l2 LOC106612957 coding upstream 64964 23360153 ~ 23388694 (-)
LOC110504044 LOC106581230 coding upstream 116990 23412179 ~ 23539189 (-)
LOC118944114 LOC106609580 coding upstream 128664 23423853 ~ 23426869 (-)
G1915254 NA non-coding downstream 6999 23219586 ~ 23219798 (-)
G1915207 NA non-coding downstream 24338 23202125 ~ 23202459 (-)
G1915200 NA non-coding downstream 96100 23125809 ~ 23130697 (-)
G1915199 NA non-coding downstream 97491 23125096 ~ 23129306 (-)
G1915179 LOC106612965 non-coding downstream 129211 23091134 ~ 23097586 (-)
G1915279 NA non-coding upstream 481 23295670 ~ 23295905 (-)
G1915288 NA non-coding upstream 13648 23308837 ~ 23309911 (-)
G1915296 NA non-coding upstream 16328 23311517 ~ 23312147 (-)
G1915300 NA non-coding upstream 48825 23344014 ~ 23344741 (-)
G1915302 NA non-coding upstream 50745 23345934 ~ 23346391 (-)
G1913663 NA other downstream 1354648 21871253 ~ 21872149 (-)
G1913665 NA other downstream 1362523 21863588 ~ 21864274 (-)
G1912470 NA other downstream 2250561 20972679 ~ 20976236 (-)
G1911862 NA other downstream 2765360 20460668 ~ 20461437 (-)
G1910996 NA other downstream 3535284 19691066 ~ 19691513 (-)
G1915836 NA other upstream 456654 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 2868276 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 2915227 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 3615595 26910083 ~ 26935725 (-)
G1919707 NA other upstream 4034261 27329450 ~ 27331899 (-)

Expression

LOC110504038(LOC106612963) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110504038(LOC106612963) Expression in each Bioproject

Bar chart with 20 bars.
LOC110504038(LOC106612963) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network