LOC110504039 (LOC100380712)


Basic Information

Item Value
gene id LOC110504039
gene name LOC100380712
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23314175 ~ 23330065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582842.2
ctaaatacttttttgccccactgtaattatatatttgtatttgattgtagGGAATCCAATCCCTATTTACATACTGGCCCATCCTAAATTATATACTTATCCAACAGTATTTTGTCACTGATCCAACAGTATTCACCtgcaagtgtagtgaaatgtATACCTATTTATAGACTGACCCAACATTATTTTCAACTGATTGTAGGAAAAGCAATCCCTATTAGATACACACCTGTGCTGCCATTGATCAATGTTAACCGGCGAGATTCATTATTATAGAAAAATTGTTCTGCTAAATTGAACCCCAACATTTTGTTGATGAGGAGGACGAGATCTTACACCATTAAGGCTCGGCTGGAAAACAGACAGTCCCTCTCACAGAGATGTTTAAATAAGGTATCTTACCTTTTTCCAAGCCGGGCAGAACGGATCAGTAATTCAGGTTCTCATCCGGATCCCGCCACCAAATGTTGTTGAAAATTAGATCCAAAGATGAAGGCAGAGACTACTTAATGGTATAATAGAAAACCTTTAATACAAGCAGCTGTAGGGGAGATCTAACTCTGATTTCACAGGGAAGAACTTGAGAATGGCTGCATGTTCTTTATATAGTGGGAAGTGATAACACAATAAAATTGTTTACACAACAGTTATTTTATACAAGCAACAGTTACGGAACACAATAGCTTTGTGTTAGGGTGCATACATACCAGGAGTCTATGAAAGGCATTACATCACAGTCCAACACAGAACATATCCCTTGAGAAGTTTCAACAGCTCAACACAAATTTTGCCACCACAGTTGGAAGGGTGTTTTTTTGTAGTTTTACTTTTGTTTTTCCTTTCCCCGTTTTGTATCACAAAGTATAATGATTTTATATTATAGTCCAGTTTGTGGCGGTAATGAGgcatattggatgccaaccgccgttgAACTccaaagaaaaagaagaagaatcaGAAATCTCCGGAAGAAAACGTCATTTCCTGGTCTTGCAACTGACGTGTCTAaaacagtgttagtggaggtagCTAGACTTGGGAGGAAATTTTTCATCAGATACTGTATATCTGATTAGATTTCCTTCTGGAGGCGAAGCCACTTAAAATATTCTTCCGATCAGTTATTTATAGCGTTTTTCCCCCTTCCGTTTAACGTTTTTGCTAGTTTGTTTTCTTTACGTTGGTATATTATCTCGTGTACGTGGTGTCAAGATGCTGGATTTCTTCACCATCTTTAGTAAGGGGGGcatagtgttgtggtgttttcAGGGAACCGGTGTTACAGAATCCTTCACCGGGCCTGTCAACGCGCTGATCCGCTCCGTGATCCTTCAGGAACGCAGTGGCAACAATTCCTATTCTCATGATGCCTTGAGTCTTAAGTACAAACTCGATAATGAGTTTGAGCTGGTTTTTGTGGTGGGTTTTCAAAAAATCCTGACGCTGACGTATGTTGACAAGTTCATAGATGACGTACAGCTCCACTTCAGGGATCGCTATAAGAATGAGCTGGAGCAAAAGGGGGCCCTTGCGCTGTTGAACAGCCATTTTGCGTTTGAGGATGACTTCAAAATGCTTCTTCGTGAGGCGGAGGAGAGCAGCAAAGCTCGAGGTCCCACCTCCATGAGAAGCTTCAATGCTTCCCTGAAATCCCAGAAAACTGTGAAGTCCATGATCGAGACGAAGGGAGGGGATAAGGGCAAGGAACAGGGTGGCAAGAAGAATAAGAATGCCAAAAAAGAGGCTCCTGCTGCTGAGCCTGTGAAAGGGGAAAAAGCTAAGGCTCCGACCAGTGCCCAGAAGACAGAAGAGAACGGTAACCAAGGCTTGACCCAGGAGGAGATCAttcagaagaagagagaggagtttATCCGCAAGCGCATGGGGGCACCTGTGGAGAAGCCCAGTAAGTCCCCCAAGCCTGTGAAGGAGAAACCCAAGGGGAAAGAGAAGCGGGTATGGACCTTGGGTGGCAGCAGCACCAAAGAACTGGACTACAGCCAGAGCAATGGCAATGGAGCCCATGCTGCTGGAGACCAAGGCTTGGATGCTCAAGCTGACCCGGGGATGCAGCTGAGCTCGATGAAGGGTGACTTGCTCGCCGTGGATTACGAGtccagcgagggagaggaggaggaagaagatgcTGTAGAGAGGGTGGTAGTTGCTGACACTAGCAAGAAAATCCCCAAAAAGGGTGCTTTTGGAGGGATGTTTGGGATGCTGAAGGGCCTGGTGGGTTCTAAGAGTCTGAGCCAGGAGGACATGGAGCCAGTTCTGGACAAGATGAGGGACCACCTCATCGCTAAGAATGTAGCAGCCGAAATTGCCTCCCAACTCTGTGACTCTGTAGCCAAGAAACTGGAGGGCAAAGTCATGGGCACCTTCACCACTGTGGCCTCAACTGTAAAGGGGGCCCTGCAGGACTCCCTGGTCCAGATCCTGCAGCCTAAGCGGCGTGTGGACATCCTGAGAGACGTCCTGGAGGCTCGTAGCCAGCGCAGGCCCTTCGTCATCACCTTCTGTGGGGTCAACGGGGTCGGAAAGTCCACCAACCTGGCCAAGATCTCTTTCTGGCTAATCGAGAATGGTTTCACCGTGCTGATAGCAGCCTGTGACACATTCCGTGCGGGGGCCGTGGAGCAGCTGCGTACCCACCAGCGCCGCCTTAACTCCCTGCACCCCCCTCAGGACCACGGGGGACGGCCCATAGTGCAGCTTTATGAGAAGGGCTACGGGAAGGACGCCGCTGGCATCGCCATGGAGGCTATCGCCTATGcccgTAACCAGGCCTTTGATGTGGTGCTGGTGGACACTGCTGGGCGGATGCAGGACAACACCCCCCTGATGACGGCTCTGGCCAAGCTGATAGCTGTCAACATGCCTGACCTGGTGCTGTTTGTGGGGGAAGCTCTAGTGGGCAACGAGGCTGTGGACCAGCTGGTGAAATTTAACCAGGCGCTGGCTGATCACTCCATGTCTGATAAGCCTCGTCTCATCGACGGGATCGTTCTCACCAAGTTTGATACCATTGATGACAAGGTTGGCGCTGCCATCTCAATGACCTACATCACAGGCCAGCCCATTGTGTTTGTGGGCACAGGGCAGACCTACAATGACCTGCGGAGCCTCAACGCCCGTGCTGTTGTGGGCGCCCTCATGAAGGCCTGAGTGGCTACATCCATGTTCACCACTATCGTGACAAAGCCAACTAAACACAGCGCTTTGAGATGTCCGGTCCTGCTAACCCTGTCCTGTGGCTCACATCCTAACCCTCCACATAGCACCAAATGCAAAACACACAAGCTTCCTCCCAACTCCATCTGGGAAAGGGGTGGGTGTTGACTTTTAAGCAAGAGTCTCTTGCTGTAAACGGTTGGGCCAAATTCAAAAGTACCTCAATTTTGTTTTAAAGTTCAAAAGACACATTTCCTGACTTTTTATCTGATCAAATAGAGAATATTTATTTGTCCTCACTCACAGGTTACTCATTGTCAAATTCACTTCCTGGCATTTGGTGTCTGTTTTCCCCCTTCACTTCAACGAGAACATGTCAGTTATAAAGGCTTGCTGGATGCGACACGTTTCAGCAGCCGTCCCGTTCCCGAGGAAAGCTTAGTGACCATAGTGCCTATCCTATCCGTTTCCCTGAAGCATCACCACTACACGGGTGACCGTCTGTCTGCTGAGATCTGAAACTTCAACAAACCCAGTAACTACCTTCTGCTTCTAGCTCTCTGGATGGACTGCTATAACCCCCATCCCGATGCTCCCTTCTTCCTCTGCAATTGGAGACTTGAATGATCCTTCAGTTTGTGGTCGAGTTGAAAAAAATAACTTAAGACATTTTTTGGGGTTGTCCTCCAGGGTCTACAACTGGAGCACTAGGCCTTGACTTTAGCTTTTTCAATTTCTTCCCCTttgtcattttgaaaacaaatacaAGTCTTACATTTTTCCAGTCCCTTTTAATTTGCAGTAGTGCAATGAGAATCAAGAGTTGTATAGATTTGTCATTTGAgaatgtaaacatttctaaataaaGCTGCTATGATGGCATGGAA
>TU2189976
cctttacacttgtgtgtataaggtagttgtgaaattgttaggttagattacttagatattactgcatggtcggtactagaagcacaagcatttcgctacactcacattaacatctgctaaccattggtatgtgacaaataacattggatttgatttacATTTACCAACTTTATTAAACATGCTCAATCCTTTAGTTCACTTCCTCTCatgtgcacaattggtggctgactaaatacttttttgccccactgtaattatatatttgtatttgattgtagGGAATCCAATCCCTATTTACATACTGGCCCATCCTAAATTATATACTTATCCAACAGTATTTTGTCACTGATCCAACAGTATTCACCtgcaagtgtagtgaaatgtATACCTATTTATAGACTGACCCAACATTATTTTCAACTGATTGTAGGAAAAGCAATCCCTATTAGATACACACCTGTGCTGCCATTGATCAATGTTAACCGGCGAGATTCATTATTATAGAAAAATTGTTCTGCTAAATTGAACCCCAACATTTTGTTGATGAGGAGGACGAGATCTTACACCATTAAGGCTCGGCTGGAAAACAGACAGTCCCTCTCACAGAGATGTTTAAATAAGGTATCTTACCTTTTTCCAAGCCGGGCAGAACGGATCAGTAATTCAGGTTCTCATCCGGATCCCGCCACCAAATGTTGTTGAAAATTAGATCCAAAGATGAAGGCAGAGACTACTTAATGGTATAATAGAAAACCTTTAATACAAGCAGCTGTAGGGGAGATCTAACTCTGATTTCACAGGGAAGAACTTGAGAATGGCTGCATGTTCTTTATATAGTGGGAAGTGATAACACAATAAAATTGTTTACACAACAGTTATTTTATACAAGCAACAGTTACGGAACACAATAGCTTTGTGTTAGGGTGCATACATACCAGGAGTCTATGAAAGGCATTACATCACAGTCCAACACAGAA

Function

NR:

description
LOW QUALITY PROTEIN: transcription and mRNA export factor ENY2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582842.2 False 4064 mRNA 0.47 14 23314403 23330065
TU2189976 True 977 lncRNA 0.37 1 23314175 23315151

Neighbor

gene id symbol gene type direction distance location
LOC110504037 LOC106612964 coding upstream 127137 23152236 ~ 23187266 (+)
LOC110504034 LOC106612965 coding upstream 194935 23085042 ~ 23119468 (+)
LOC118944012 NA coding upstream 262163 23048820 ~ 23052240 (+)
LOC118944002 LOC100136491 coding upstream 344545 22941631 ~ 22969858 (+)
LOC110504032 LOC106612968 coding upstream 996463 22304617 ~ 22317940 (+)
LOC110503371 LOC106581229 coding downstream 58781 23388846 ~ 23395594 (+)
LOC118944115 NA coding downstream 157102 23487167 ~ 23501677 (+)
LOC110503375 LOC106612943 coding downstream 422869 23752934 ~ 23766218 (+)
LOC110503376 LOC106613110 coding downstream 462815 23792880 ~ 23795998 (+)
LOC110504048 NA coding downstream 525078 23855143 ~ 23888178 (+)
G1915038 NA non-coding upstream 3431 23310132 ~ 23310972 (+)
G1915037 NA non-coding upstream 4510 23308206 ~ 23309893 (+)
G1915035 NA non-coding upstream 6501 23306914 ~ 23307902 (+)
G1915039 NA non-coding upstream 8809 23304761 ~ 23305594 (+)
G1915067 NA non-coding upstream 30867 23283097 ~ 23283536 (+)
G1915089 NA non-coding downstream 14241 23344306 ~ 23344729 (+)
G1915041 NA non-coding downstream 17442 23347507 ~ 23348393 (+)
G1915090 NA non-coding downstream 18805 23348870 ~ 23349338 (+)
G1915091 NA non-coding downstream 19731 23349796 ~ 23350141 (+)
G1915117 NA non-coding downstream 53421 23383486 ~ 23384851 (+)
G1913153 NA other upstream 1119796 22193790 ~ 22194607 (+)
sacs LOC106612984 other upstream 1652705 21648371 ~ 21683308 (+)
G1912565 LOC106612993 other upstream 2111954 21201136 ~ 21202449 (+)
G1911474 NA other upstream 3007011 20304763 ~ 20307392 (+)
G1911460 LOC105030512 other upstream 3028337 20284320 ~ 20286066 (+)
G1915361 LOC106611080 other downstream 95124 23425189 ~ 23426072 (+)
G1916129 NA other downstream 682200 24012265 ~ 24012808 (+)
G1916588 NA other downstream 1188295 24518360 ~ 24519017 (+)
G1916660 NA other downstream 1311633 24641698 ~ 24642134 (+)
G1916811 NA other downstream 1595069 24925134 ~ 24927054 (+)

Expression


Co-expression Network