LOC110504040 (LOC106612962)


Basic Information

Item Value
gene id LOC110504040
gene name LOC106612962
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23330119 ~ 23341771 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582843.2
TTACCCCTTTCCAGAATGTAGAGAGCCAGTGGGATTTACAGTAGCGCGCTGAGCACATCCCAATTGCCTTGTCCAACTccgtcacaacacacacagtcagacctcCAGCTGCATATGAGTCGACAGGTTGTGTACACAGAGGAAGTCGACTGAGAAAATTTGATAGCTAAATAGATTTGCTAAGAATAACATCTAGTAGACAAAGGCACGCAGACTTCGCCATGTCAAGTACAACAATCTCAAATACCGGCTTTTAAAGCAGGATATGTCCGTAGTAGACTGTACTGGATTTTTAACTCGCAGTTGCAAGTCAGCTGACGTTAAACGGGTCGTCTGCTAGCAAGTTGAATATTTCCACTGACCAAAAAAGCAACTTGGAGTTATCCGGGAGCCGAATGGCCTCTGTTGTGGCCTCTGTTGTGACTGTGAAAACCGAGAAGCGGCCTGCTCCTGCTGACCCTCAGGATGTTGACTCCAACACCAAAAAACCCAGGATTTGGGCACCATCAATGGAACCATCACTCAATCTCTGCCTGCCCCAAAGGAAACTGCTGCCCAGCCTGAAGACCAAGCGGGCCTCCGAGCTGGTCCTAGTTATTGGTACAGGGGTGAGTTCAGCTGTGGCCCCTCAGGTCCCTGCATTGCGCTCCTGGAAGGGTTTGATCCAGGCCTTGTTGGACGCGGCCAACGACTTTGACCtcctagaggaagaggagagtcgGCGTTTTCAGAAGAGCCTGAAGGACGACAAGAACCTAGTCCACGTGGCTCATGACCTCATCCAGAAGCTCTCTCCGAGAACAGGCAACGTGCGGTCCACCTTCTTCAAGGACTGCCTGTACGAGGTGTTTGACGATCTGGAGTGTAAGATGGAGAATGCGGGGAAGCACCTTCTCCGCTCCGTACTGCAGCTGATGGAGAGTGGAGCGCTGGTCCTCACCACCAACTTTGACAACCTGCTGGAAATTTATGCAGCCCACCAGGGATCGAAGCTGGAGTCTCTGGACCTCACAGATGAGAAGAAGgTCCTGGAGTGGGCTCAGGGGAAGAGAAGTCTGAGTGTTTTGCACATTCACGGTGTTTACACGAATCCCAGTGGCATTGTACTGCACCCTGCTGGCTACCAGAATGTACTGAGGAACACTGAAGTCATGAGAGAGATCCAGAAACTGTATGAGACCAAATCATTTGTGTTCCTGGGCTGCGGGCGCACAGTGGACGACACCACCTTCCAGGCTCTGTTCCTGGAGGCGGTCAAACACAAGTCGGACCTGGAGCACTTCATGCTGGTGCGGCGCGAGGACGTTGGAGAGTTCAAGAAGCTGCGGGACAACATGCTGGACAAGGGCATCAAGGTCATCTCCTACGGCAATGAGTATTCTGACCTGCCCGAGTACTTTGAGCGGCTGGCCAATGAGATCTGCAACCGCGACGCCGTCATTAACGGCTGGGGATCTCCCTCTCAAGAAGAACAGGAAACCCAGAATGGCTTTCATTCACAGAAGTGCCTCCTTCAAGACTATTCTTCTTGACAGGCACAAAACAGGTGGGAGTATCAGTCCTTTTCATTCACCGTTCCTTCATAGAGTTCAGTCTACTACTCAGGTCTGGTTTCATTGGATCTACTACAACTCCTCCAGGCAAATATGGGCCAGAAGAGAACATGTTACTGCTCTGTAGTCACCCGctgattgtttttatttttttctgtacCGGTTGTCATGAAAGGGAAAGATCCAGCCAAAGGAGCTAACAGGAAAACAGCTGTCCACCCAATGTAAATGTAGGCCTAATGGATATAGATGTGTGAAGCAGGGATGACAATGTCAGGTCCCTGATCTGGTTTCTCGCATATCATCATTTGGAAATGAATCCTGTCCTGAATGGATGGCTGGAGTCAGTCCAGTGGACCTAGATGTGAGTTTCTGAAGAGAAGCAGGCAGCCAATATATGGCGTAAGGGCTGTTCCGATGCAGCCTtttgccgtggtatattggccatataccataaacccctgaggtgccttattgctgttagaAGCTacttaccaacataattagacaGTCTGATAtgtcaatcagcattcagggttcacTCCACCCAGCTTATTTTTATGCCTTTTGTATTGTTAATACTGCAGGTATTTAAGtgctatttaaaaaataaaaacaaacacttTGGTATCA
>XM_021582844.2
TTACCCCTTTCCAGAATGTAGAGAGCCAGTGGGATTTACAGTAGCGCGCTGAGCACATCCCAATTGCCTTGTCCAACTccgtcacaacacacacagtcagacctcCAGCTGCATATGAGTCGACAGGTTGTGTACACAGAGGAAGTCGACTGAGAAAATTTGATAGCTAAATAGATTTGCTAAGAATAACATCTAGTAGACAAAGGCACGCAGACTTCGCCATGTCAAGTACAACAATCTCAAATACCGGCTTTTAAAGCAGGATATGTCCGTAGTAGACTGTACTGGATTTTTAACTCGCAGTTGCAAGTCAGCTGACGTTAAACGGGTCGTCTGCTAGCAAGTTGAATATTTCCACTGACCAAAAAAGCAACTTGGAGTTATCCGGGAGCCGAATGGCCTCTGTTGTGGCCTCTGTTGTGACTGTGAAAACCGAGAAGCGGCCTGCTCCTGCTGACCCTCAGGATGTTGACTCCAACACCAAAAAACCCAGGAAACTGCTGCCCAGCCTGAAGACCAAGCGGGCCTCCGAGCTGGTCCTAGTTATTGGTACAGGGGTGAGTTCAGCTGTGGCCCCTCAGGTCCCTGCATTGCGCTCCTGGAAGGGTTTGATCCAGGCCTTGTTGGACGCGGCCAACGACTTTGACCtcctagaggaagaggagagtcgGCGTTTTCAGAAGAGCCTGAAGGACGACAAGAACCTAGTCCACGTGGCTCATGACCTCATCCAGAAGCTCTCTCCGAGAACAGGCAACGTGCGGTCCACCTTCTTCAAGGACTGCCTGTACGAGGTGTTTGACGATCTGGAGTGTAAGATGGAGAATGCGGGGAAGCACCTTCTCCGCTCCGTACTGCAGCTGATGGAGAGTGGAGCGCTGGTCCTCACCACCAACTTTGACAACCTGCTGGAAATTTATGCAGCCCACCAGGGATCGAAGCTGGAGTCTCTGGACCTCACAGATGAGAAGAAGgTCCTGGAGTGGGCTCAGGGGAAGAGAAGTCTGAGTGTTTTGCACATTCACGGTGTTTACACGAATCCCAGTGGCATTGTACTGCACCCTGCTGGCTACCAGAATGTACTGAGGAACACTGAAGTCATGAGAGAGATCCAGAAACTGTATGAGACCAAATCATTTGTGTTCCTGGGCTGCGGGCGCACAGTGGACGACACCACCTTCCAGGCTCTGTTCCTGGAGGCGGTCAAACACAAGTCGGACCTGGAGCACTTCATGCTGGTGCGGCGCGAGGACGTTGGAGAGTTCAAGAAGCTGCGGGACAACATGCTGGACAAGGGCATCAAGGTCATCTCCTACGGCAATGAGTATTCTGACCTGCCCGAGTACTTTGAGCGGCTGGCCAATGAGATCTGCAACCGCGACGCCGTCATTAACGGCTGGGGATCTCCCTCTCAAGAAGAACAGGAAACCCAGAATGGCTTTCATTCACAGAAGTGCCTCCTTCAAGACTATTCTTCTTGACAGGCACAAAACAGGTGGGAGTATCAGTCCTTTTCATTCACCGTTCCTTCATAGAGTTCAGTCTACTACTCAGGTCTGGTTTCATTGGATCTACTACAACTCCTCCAGGCAAATATGGGCCAGAAGAGAACATGTTACTGCTCTGTAGTCACCCGctgattgtttttatttttttctgtacCGGTTGTCATGAAAGGGAAAGATCCAGCCAAAGGAGCTAACAGGAAAACAGCTGTCCACCCAATGTAAATGTAGGCCTAATGGATATAGATGTGTGAAGCAGGGATGACAATGTCAGGTCCCTGATCTGGTTTCTCGCATATCATCATTTGGAAATGAATCCTGTCCTGAATGGATGGCTGGAGTCAGTCCAGTGGACCTAGATGTGAGTTTCTGAAGAGAAGCAGGCAGCCAATATATGGCGTAAGGGCTGTTCCGATGCAGCCTtttgccgtggtatattggccatataccataaacccctgaggtgccttattgctgttagaAGCTacttaccaacataattagacaGTCTGATAtgtcaatcagcattcagggttcacTCCACCCAGCTTATTTTTATGCCTTTTGTATTGTTAATACTGCAGGTATTTAAGtgctatttaaaaaataaaaacaaacacttTGGTATCA

Function

NR:

description
protein FAM118B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582843.2 False 2186 mRNA 0.49 8 23330119 23341771
XM_021582844.2 True 2135 mRNA 0.49 8 23330119 23341771

Neighbor

gene id symbol gene type direction distance location
LOC110503370 LOC106581078 coding downstream 29440 23281883 ~ 23300679 (-)
LOC110504038 LOC106612963 coding downstream 34930 23226797 ~ 23295189 (-)
LOC110504036 LOC106581096 coding downstream 185152 23139967 ~ 23144967 (-)
LOC110504033 LOC106612966 coding downstream 281378 22999057 ~ 23048741 (-)
LOC110503369 LOC106612967 coding downstream 653843 22462266 ~ 22676276 (-)
LOC110504042 LOC106612961 coding upstream 10341 23352112 ~ 23358660 (-)
glb1l2 LOC106612957 coding upstream 18382 23360153 ~ 23388694 (-)
LOC110504044 LOC106581230 coding upstream 70408 23412179 ~ 23539189 (-)
LOC118944114 LOC106609580 coding upstream 82082 23423853 ~ 23426869 (-)
trnaa-ugc-180 NA coding upstream 242908 23584679 ~ 23584754 (-)
G1915296 NA non-coding downstream 17972 23311517 ~ 23312147 (-)
G1915288 NA non-coding downstream 20208 23308837 ~ 23309911 (-)
G1915279 NA non-coding downstream 34214 23295670 ~ 23295905 (-)
G1915254 NA non-coding downstream 110321 23219586 ~ 23219798 (-)
G1915207 NA non-coding downstream 127660 23202125 ~ 23202459 (-)
G1915300 NA non-coding upstream 2243 23344014 ~ 23344741 (-)
G1915302 NA non-coding upstream 4163 23345934 ~ 23346391 (-)
G1915303 NA non-coding upstream 4974 23346745 ~ 23347071 (-)
G1915304 NA non-coding upstream 5756 23347527 ~ 23347809 (-)
G1915305 NA non-coding upstream 6055 23347826 ~ 23348406 (-)
G1913663 NA other downstream 1457970 21871253 ~ 21872149 (-)
G1913665 NA other downstream 1465845 21863588 ~ 21864274 (-)
G1912470 NA other downstream 2353883 20972679 ~ 20976236 (-)
G1911862 NA other downstream 2868682 20460668 ~ 20461437 (-)
G1910996 NA other downstream 3638606 19691066 ~ 19691513 (-)
G1915836 NA other upstream 410072 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 2821694 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 2868645 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 3569013 26910083 ~ 26935725 (-)
G1919707 NA other upstream 3987679 27329450 ~ 27331899 (-)

Expression


Co-expression Network