LOC118944114 (LOC106609580)


Basic Information

Item Value
gene id LOC118944114
gene name LOC106609580
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23423853 ~ 23426869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962197.1
caaaaggagacaactcacaaatgtgggaattctggagattttttaaaattctgacaatgagtctgaaagtcaggaatcagattctgacagtgaggagctgccccCCAACCTTGTAGCCATTGAGAAACCTGAATCTGAATTTCCCTTGTCCACTGACGAAGTACCAggtccctttgaagatgctggtggtgatggaggcagaccgacagtggatgaagtacaggagttctgtggtagctggaaggtCACCAGtcatttcacccctcctggccctgctgtttgctttgacgagtcccagtctggagtgcaacgccccttgccatttccaactgaggcagagtgcttcaagttgtttctgacagaggagctggtgggaaACATAGTAGAGGAGACCAATCGCTATTCCTTGGAGCTACAGGAGATGAGAGAGCCAGGAGTGAGGGGGAAACTCGCTAAATGGGTGACAACCACAATTAGcgaaatgtataccttcctggtgacagtcctcctcatggggatagtaaagaagaactctaagagaatactggagcacagatcctatgtttgcaactcccttctttgccaccctcttttcccaagaCCGCTTCCTAGTTCTGCTGCGATGCCTGCATTTCGTCAACAATGCTACTAAGTCACAcgttatacaaaataagaaatgttcTCATCAGCCTGACATCAGCGTTTGGTCGGGTCTTTGTGCCATACAAGGACCTATGCATTGATGAGTCCCTGATGTTATGGAAAGGTAGGCTGGCGTTCTGTCAATATATTTCCTCCAAAAGGCACAGGTTTGGAGTCAAGTTCCTTGTCATGTGCGACGTGAAGACAGGATTTGTCCAGGATATTATAGTTTACACAGGGTCCACCACTGACATCAAACATTATGAGGAGCTTGGGGTGTCCGGGTCCGTGGTGATGACCATGCTGGCTCCTTATCTCGGCAAGGGACACACTTTGTATGTGGACAATTGGTATAGCAGTCCCACACTCTTCCAGCATCTGATCTCCAACAGCACAGGGGCCTGTGGCACAGTCGTGTCGAACAGGAAGGGGATGCTGGCATTCGGATGCAGGAAGAtgcagagaggggaggtggagttcCAGGAGAACggtcaacagctggcagtaaagtggcatgacaaacgagacgtccatgtcctctccactgtccatacagcaaccatgtcggccacagggaaggtggaccacctgacgggagagagaaagatcaaaCCAGATTGTGTGCTTGATtataacctcaaaatgggggccatggataaggcggacatgataaacagctttgtggaatgcactAGGAAAACGACCAAGTGGTATAAGAAGATATTTTTCCATCTGATCGACACTGCTGCCCTCAATGGTCACATAATTCACCGCCAACTAACAGGTGAGATGATTACTGAACAAGGTATTTTTGTAACTGGATGTACAGTTCACATACGCATTATGCAATTATAGTGACAATATCTCACCCACCTACCCACTGCCTCATCATCCTCTAACTTTCCTCATTCTCCCCACTCCCTCATAGGTAAAGTAATTACCTACCAAAAATACAGCGATAACCTCATGAGAGCTGCTGGAGGAGCACCACACTCCTCGGCGCCCAACCACTGGGGGTCGTCCTGCTGTAGACAATCCCCTACGCCTCACTGCACGGCATTTTCCCTGCAAAGTCCCTCAAACTGCTGCTCATGGTAGTTGCACACGGAGGCACTGCAAAGTCTGCCTGTCTGGCGCCAGGAGACGTAAGCAGAGGAAGATGACAAAGATGGCAGTGTTTAGCTTGTGATACACCTCTATGTATTTCACCATGCTTTGAGGAGTATCACATGCTCAAGCATTATTGAGCATATCTGCAGCAAAAAGTGACTGACTGACCTAACAGGTGACCtgccatgatactatgccttTAGAGATGGGGGTGGAAATGCAGTTGTTGTTCAGTCACTGCATGGATATTAAATATGGGTTATGCATATTCCGTTTTTTGTCCTCTAGTAAAACAAGTTGTTGAACCAACTACCAATATTGCAATAAAATAGATGACTATTACATATTGGCATATGTGTTTTCTTGATGTGTTTTCATCCAGTACAACTGTTAAGTTGTACGTTAGCATACGTTAGCATACAAAAGCTGTCATTCTGTACGTTAGCATACAAAAGCTGTCATTCTTCAGCTCCAAAGATGTCCAGCTCTAGTTATGATATTGGCAAATAATGTTTGTGGTTTCTGAAAGTACAGAATAAAGAATAATTATTAATTAGAATACAATATAAGGATATCGCAATACAACAATACTACAAAGAAGTAACATGCTATAAAAAAAATAGTTTATTGCATTGACAAAAATCACAGATTTGAGTTATAACAGTAAGAGGGGCaaggcagggcagaacagagctaTGTTGAATAGACCAAATAAACAAACCATGGTCATATTTTTATCTAGGCAAATCATTTAAGAACAaactattatttacaatgatggcctacaccggccaaactcggACAACGCAGccaggatttgaaccagggtgtctgtagtgactgagatgcagtgccatagaccgctgcgccacttgggagtcataagtacagggtagcttcaaaatacaacacaataGTTCTCTGACGCAactagcattgttttacagagcaAATAGAATAATGTAGCTACGTAAGCACGATTGACTATAATATATAAAGGCTATAAAATGTGTAACGTTACCTCACGTGTCCGCGGTTATAAGACATATATTATGATCCATACATACAGTGAGCTACAGCAGAAACGGCATACGGAAACTATTATAACGTAacaaggcacttactttgatagaaacgctGCCTAAATTTGAACCAgggagtctgtagtgacgcctctagcactgatgcgcggtgcctttgaccgctgcaccacttgggagtcataaggccacacagcttcaaaatacaacacaagataatacttc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962197.1 True 3017 mRNA 0.45 1 23423853 23426869

Neighbor

gene id symbol gene type direction distance location
glb1l2 LOC106612957 coding downstream 35159 23360153 ~ 23388694 (-)
LOC110504042 LOC106612961 coding downstream 65193 23352112 ~ 23358660 (-)
LOC110504040 LOC106612962 coding downstream 82082 23330119 ~ 23341771 (-)
LOC110503370 LOC106581078 coding downstream 123174 23281883 ~ 23300679 (-)
LOC110504038 LOC106612963 coding downstream 128664 23226797 ~ 23295189 (-)
trnaa-ugc-180 NA coding upstream 157810 23584679 ~ 23584754 (-)
LOC110503372 NA coding upstream 294078 23720947 ~ 23724175 (-)
LOC110503373 NA coding upstream 301850 23728719 ~ 23730247 (-)
mmp20a LOC106613041 coding upstream 304131 23731000 ~ 23735028 (-)
LOC110504045 LOC106612955 coding upstream 387733 23814602 ~ 23838054 (-)
G1915347 NA non-coding downstream 16335 23407289 ~ 23407518 (-)
G1915341 NA non-coding downstream 20580 23402903 ~ 23403273 (-)
G1915339 NA non-coding downstream 21225 23402389 ~ 23402628 (-)
G1915311 NA non-coding downstream 72235 23351306 ~ 23351618 (-)
G1915309 NA non-coding downstream 72712 23350897 ~ 23351141 (-)
G1915593 NA non-coding upstream 164690 23591559 ~ 23591974 (-)
G1915803 NA non-coding upstream 300738 23727607 ~ 23727920 (-)
G1915834 NA non-coding upstream 322053 23748922 ~ 23749386 (-)
G1913663 NA other downstream 1551704 21871253 ~ 21872149 (-)
G1913665 NA other downstream 1559579 21863588 ~ 21864274 (-)
G1912470 NA other downstream 2447617 20972679 ~ 20976236 (-)
G1911862 NA other downstream 2962416 20460668 ~ 20461437 (-)
G1910996 NA other downstream 3732340 19691066 ~ 19691513 (-)
G1915836 NA other upstream 324974 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 2736596 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 2783547 26208892 ~ 26241410 (-)
LOC110504098 LOC106613118 other upstream 3483915 26910083 ~ 26935725 (-)
G1919707 NA other upstream 3902581 27329450 ~ 27331899 (-)

Expression


Co-expression Network