LOC110503376 (LOC106613110)


Basic Information

Item Value
gene id LOC110503376
gene name LOC106613110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23792880 ~ 23795998 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503376
atggaaatcacaGATTTACTGCTCCTTGTGGTGGTTGCTCAGTCATTTGCTATGCCTCTATCATCACTGGAGGAGACTAAAAAGTGGCTATTAGCCGAGAAATACCTCCGCAGGTTCTACAACCTTCGAGCTGGACTTCAGGGAACAAAGACCGACAGGTCTTCAGACGCCATGCAGGCTAAGATCAGGGAGATGCAGTCCTTCTTCAACCTCCAGGTGACGGGGAGCCTGGACGCTAACACCCAGGAGCTGATGAGCATGGCCAGGTGTGGTGTCCCTGACGTGGGGGAATACAACCACTTCCCCCGACACCTCAAATGGCAGAACACCATTGTGACCTTCAGAGTAGTGAATTATACTCCTGATCTGAAGAAGGCTGATGTGGACAGAGCTATCCGTAACGCCTTCAGCATCTGGGCTGACGTCACTCCTCTGACCTTCAAGAAACTGCATGAGGGGAAGGCTGACATCATGATTTTATTTGGGACCAAAGAACATGGAGACTTCAACCCCTTCGACGGCCCTGACGGTCTCTTAGCCCATGCCTATGCCCCTGGCAGAGACATTGGAGGAGACACACACTTTGATGAAGATGAACATTGGTCAAAAGACTCAGACGCCTACAACCTTTTCCTGGTGGCCACCCATGAGTTTGGCCATTCCCTTGGCTTGTCCCATTCTACTGATCCTGGGGCTCTGATGTACCCAGTCTACTCCTATAGCCAGGGTAACCCACTGTCTGAAGATGATATCACCGGCATTCAAGCTCTTCATGGCCCGAACCCCAGGCACAGGAAAGTGAAGCCGAagccagatgccccaaacaaatGTGACCCCATGTTGAGTTTTGATGCTGTTACTGAGCTCAGAGGAGAAACGATCATCTTCAAAGACAGGTTTTACTAGCGTCTCCATCCCGAGTTTGCAGAGCCTGAGCAAACCCTGATCAAATCCACCTGGCCCTTCCTCCCCAACAAAGTGGATGCTGCCTATGAGTACCCTGAGAAAGACATGGTCTTCATATTCAGTGGTATTAGAATGTGGGCTCTGAATGGCTATAACCTGGTGGAGGGCTACCCCAAATACATCTTTAAACTGGGACTCCCCAAGACCGTGCGGACGGTGGATGCTGCTGTGTACATCCCAGTCACCGGCAAGACACTGTTGTTCTCTGAGGAAGATTACTGGAGTTATAATGAGAAAACTAACACAATGGACAGCGGCTTCGCAAGATCCATTGAGATGGATTTCTCTGGAATGGCAGAGGAGGTGGATGCTGCTGTATATCAATATGGATATTTGCATTTCttccatgaacacacacagttTGAATACAGCTACAGTGCAAGGAAGGTCATTCAGATTGTTAGGACAAACTCCTTTCTCAACTGCTGA

Function

NR:

description
collagenase 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503376 True 1395 mRNA 0.49 10 23792880 23795998

Neighbor

gene id symbol gene type direction distance location
LOC110503375 LOC106612943 coding upstream 26662 23752934 ~ 23766218 (+)
LOC118944115 NA coding upstream 291203 23487167 ~ 23501677 (+)
LOC110503371 LOC106581229 coding upstream 397286 23388846 ~ 23395594 (+)
LOC110504039 LOC100380712 coding upstream 462815 23314175 ~ 23330065 (+)
LOC110504037 LOC106612964 coding upstream 605614 23152236 ~ 23187266 (+)
LOC110504048 NA coding downstream 59145 23855143 ~ 23888178 (+)
LOC118944003 NA coding downstream 140319 23936317 ~ 23952562 (+)
pipox pipox coding downstream 857976 24653974 ~ 24670701 (+)
LOC110503380 LOC106613089 coding downstream 1313102 25109100 ~ 25111398 (+)
LOC110504061 LOC106613084 coding downstream 1324740 25120738 ~ 25239451 (+)
G1915835 NA non-coding upstream 40221 23752326 ~ 23752659 (+)
G1915833 NA non-coding upstream 43657 23748926 ~ 23749223 (+)
G1915826 NA non-coding upstream 48268 23744402 ~ 23744612 (+)
G1915778 NA non-coding upstream 77485 23715164 ~ 23715395 (+)
G1915776 NA non-coding upstream 78415 23713939 ~ 23714465 (+)
G1915868 LOC106612955 non-coding downstream 18641 23814639 ~ 23816814 (+)
G1915999 NA non-coding downstream 115483 23911481 ~ 23911684 (+)
G1916008 NA non-coding downstream 121690 23917688 ~ 23917908 (+)
G1916025 NA non-coding downstream 131302 23927300 ~ 23927701 (+)
G1916043 NA non-coding downstream 140754 23936752 ~ 23937101 (+)
G1915361 LOC106611080 other upstream 366808 23425189 ~ 23426072 (+)
G1913153 NA other upstream 1598273 22193790 ~ 22194607 (+)
sacs LOC106612984 other upstream 2131182 21648371 ~ 21683308 (+)
G1912565 LOC106612993 other upstream 2590431 21201136 ~ 21202449 (+)
G1911474 NA other upstream 3485488 20304763 ~ 20307392 (+)
G1916129 NA other downstream 216267 24012265 ~ 24012808 (+)
G1916588 NA other downstream 722362 24518360 ~ 24519017 (+)
G1916660 NA other downstream 845700 24641698 ~ 24642134 (+)
G1916811 NA other downstream 1129136 24925134 ~ 24927054 (+)
G1917109 NA other downstream 1590321 25386319 ~ 25387517 (+)

Expression


Co-expression Network