LOC110504048


Basic Information

Item Value
gene id LOC110504048
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 23855143 ~ 23888178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470550.2
cgactttccgaagcggatcctctgttttgcccaccacccaggacaatggatcggatcccagccggcgaaccaaaacaacgacgccgtaaaaggggcagacaAAGCGGTCTTCTAGTCAGGCTCCAgggacgggcacatcgcgcaccacccccaagcatactactcgccaatgtccagtctcttgacaacaaggttgatgaaatacGAGCAAGGGCAGCATTCCAGAAAGACATAAagtGCGAGCTGATCAAGGGGTCGGAAATGTGgatattgccagatgttcactgtTCGAGGAACAGGCCGTAGAAGCCTTATTGTtggcaaaagtgtccataaccagagATTCAGCAGGTGGAGGACCTGCTTTATCAGGAGGATAATCTGGAAATACTGACAATGGGCTCATTGTTCCTGACATCCCATGCCCCGTCTACTGAGAATCTTGCTGTGCTCCAACATCAAGTGAACCCTACCAACGACTCATCTTTTGGTCAGGACATATACATGCATGCTCTTCGATTAGTATTGAGTCTCCAACCTATTTAGGTGCAGTCCTCCCACACTATATAGGATATTGTTTTAGCCCCAGTGCCACTCTTGATAATGgcaaacatttgtattttttggAGGAGGGTGAAAGGATAGCAGGCCCAGCTGTCAAAGTGAGAGGGGAGGCTATTCTGGATAGAGCAGGTACTTGTGTGTAGTCTATTTCTTGTGAGcttttctgtcctcagatacagAAAGCTGTGAAAGCCTGTCTGCAGATTAAGAGGTCCCAATGAAGAGCAGCAGTTTTCAGTCTTGGTGCTGGGGACTCAAAACGTTTGTTTGTGCCttggcactacacagctgattcaaatgatcaagtcatcatcaagcttcaaatggtatgttttgatgtgagagagaaagacccGAGGAAATCCCCTCAGCGCCGCCTCACCCGCTCTTAAAATAATCTTCGGGCCGACTGGGAGTCCAAGGCTGGTTAGAAGACACCGCTAGAGACactatgtaattgtgatgaactgagagaatattagggtggcactaattcattaatcatatgctgtcttccctgctcctctgttttacctctctccccacctctttcttcctcttttttGTATTTAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470550.2 True 1137 mRNA 0.47 4 23855143 23888178

Neighbor

gene id symbol gene type direction distance location
LOC110503376 LOC106613110 coding upstream 59145 23792880 ~ 23795998 (+)
LOC110503375 LOC106612943 coding upstream 88925 23752934 ~ 23766218 (+)
LOC118944115 NA coding upstream 353466 23487167 ~ 23501677 (+)
LOC110503371 LOC106581229 coding upstream 459549 23388846 ~ 23395594 (+)
LOC110504039 LOC100380712 coding upstream 525078 23314175 ~ 23330065 (+)
LOC118944003 NA coding downstream 48139 23936317 ~ 23952562 (+)
pipox pipox coding downstream 765796 24653974 ~ 24670701 (+)
LOC110503380 LOC106613089 coding downstream 1220922 25109100 ~ 25111398 (+)
LOC110504061 LOC106613084 coding downstream 1232560 25120738 ~ 25239451 (+)
akap1b LOC106613083 coding downstream 1356984 25245162 ~ 25259509 (+)
G1915868 LOC106612955 non-coding upstream 38329 23814639 ~ 23816814 (+)
G1915835 NA non-coding upstream 102484 23752326 ~ 23752659 (+)
G1915833 NA non-coding upstream 105920 23748926 ~ 23749223 (+)
G1915826 NA non-coding upstream 110531 23744402 ~ 23744612 (+)
G1915778 NA non-coding upstream 139748 23715164 ~ 23715395 (+)
G1915999 NA non-coding downstream 23303 23911481 ~ 23911684 (+)
G1916008 NA non-coding downstream 29510 23917688 ~ 23917908 (+)
G1916025 NA non-coding downstream 39122 23927300 ~ 23927701 (+)
G1916043 NA non-coding downstream 48574 23936752 ~ 23937101 (+)
G1916045 NA non-coding downstream 50290 23938468 ~ 23938701 (+)
G1915361 LOC106611080 other upstream 429071 23425189 ~ 23426072 (+)
G1913153 NA other upstream 1660536 22193790 ~ 22194607 (+)
sacs LOC106612984 other upstream 2193445 21648371 ~ 21683308 (+)
G1912565 LOC106612993 other upstream 2652694 21201136 ~ 21202449 (+)
G1911474 NA other upstream 3547751 20304763 ~ 20307392 (+)
G1916129 NA other downstream 124087 24012265 ~ 24012808 (+)
G1916588 NA other downstream 630182 24518360 ~ 24519017 (+)
G1916660 NA other downstream 753520 24641698 ~ 24642134 (+)
G1916811 NA other downstream 1036956 24925134 ~ 24927054 (+)
G1917109 NA other downstream 1498141 25386319 ~ 25387517 (+)

Expression


Co-expression Network