LOC110504083


Basic Information

Item Value
gene id LOC110504083
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 26163462 ~ 26165289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582905.2
AATGCATTCTTAGAACATAGAGAGGACTGAAAAAACACTTCACCAGTCCCTCCACTGAAGTTGCTCCTCCTCCTTGTCTCGCCGCATTGCTTGAATTTGTCTTAGAAAACGAAGGGGGAAGGAATGCATTTCATGTAAGCGCACAATTAAATAAACTAGTCTGTTTAGGTGAGCACTCAGTACAGTGCAAGGTGTATCAGTACAAACGCTGTACCTGTACATTACTCCTTCACACTAGACAAGACACTAGACACTGGACAACATGAGGACCCTGCTACTGACAACCgtgctgctggtgctgctctGTAACACTCAAGTGCTCACACTCAGGTGTTACACCTGTGAAGAGGATGATGCTGACTGCAAGCAAGTGACAGAATGTCCACCATCGAGCATGTACTGCAGAACTGTGGTGACTGCGGACACAGTGACTCGTACCTGCGAGGAGATGTGTGTCTCAGGTGTCAACGCCTACTGTTGCCAGGGTGACCTGTGTGAGAACTGACATGATCCACGGAGAACCATCACCACTGACTACACACGGTCACCTTCTGTTTAGATACAGTTGAATGTTGTGTGGAAAGTACTTTAGAATATGGGATACATTATAACCTTTCAatgaattacatttacattttagtaatttagcagacactcttatccagagcgacttagttaGTGCATTAATCtcaagatagctaggtgagacaacccatatcacagtcatagtaagtacatttttcctcaataaataagttaccagcaaagtca
>TU2193838
AGTCCCTCCACTGAAGTTGCTCCTCCTCCTTGTCTCGCCGCATTGCTTGAATTTGTCTTAGAAAACGAAGGGGGAAGGAATGCATTTCATGTAAGCGCACAATTAAATAAACTAGTCTGTTTAGGTGAGCACTCAGTACAGTGCAAGGTGTATCAGTACAAACGCTGTACCTGTACATTACTCCTTCACACTAGACAAGACACTAGACACTGGACAACATGAGGACCCTGCTACTGACAACCgtgctgctggtgctgctctGTAACACTCAAGTGCTCACACTCAGGTGTTACACCTGTGAAGAGGATGATGCTGACTGCAAGCAAGTGACAGAATGTCCACCATCGAGCATGTACTGCAGAACTGTGGTGACTGCGGACACAGTGACTCGTACCTGCGAGGAGATGTGTGTCTCAGGTGTCAACGCCTACTGTTGCCAGGGTGACCTGTGTGAGAACTGACATGATCCACGGAGAACCATCACCACTGACTACACACGGTCACCTTCTGTTTAGATACAGTTGAATGTTGTGTGGAAAGTACTTTAGAATATGGGATACATTATAACCTTTCAatgaattacatttacattttagtaatttagcagacactcttatccagagcgacttagttaGTGCATTAATCtcaagatagctaggtgagacaacccatatcacagtcatagtaagtacatttttcctcaataaataagttaccagcaaag

Function

NR:

description
short neurotoxin 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582905.2 False 771 mRNA 0.44 3 26163462 26165289
TU2193838 True 724 TUCP 0.44 3 26163465 26165245

Neighbor

gene id symbol gene type direction distance location
LOC118944077 LOC106613068 coding downstream 12059 26146652 ~ 26151403 (-)
LOC110504082 LOC106613068 coding downstream 19820 26138097 ~ 26143642 (-)
samsn1a LOC106581244 coding downstream 37081 26115257 ~ 26126381 (-)
hspa13 LOC106613070 coding downstream 48880 26108751 ~ 26114582 (-)
LOC110504077 LOC106613072 coding downstream 190173 25969231 ~ 25973289 (-)
med17 med17 coding upstream 13445 26178734 ~ 26184617 (-)
LOC110503381 LOC106613064 coding upstream 43603 26208892 ~ 26241410 (-)
LOC110504088 LOC106581294 coding upstream 239416 26404705 ~ 26457138 (-)
LOC110504093 NA coding upstream 451134 26616423 ~ 26622390 (-)
LOC110504092 LOC106613119 coding upstream 720870 26886159 ~ 26895600 (-)
G1918503 NA non-coding downstream 204 26162916 ~ 26163258 (-)
G1918500 NA non-coding downstream 6125 26157103 ~ 26157337 (-)
G1918478 NA non-coding downstream 28739 26132764 ~ 26134723 (-)
G1918493 NA non-coding downstream 32217 26130953 ~ 26131245 (-)
G1918378 NA non-coding downstream 241201 25921948 ~ 25922261 (-)
G1918513 NA non-coding upstream 9795 26175084 ~ 26175302 (-)
G1918544 NA non-coding upstream 21688 26186977 ~ 26187546 (-)
G1918545 NA non-coding upstream 22453 26187742 ~ 26187988 (-)
G1918549 NA non-coding upstream 27996 26193285 ~ 26193682 (-)
G1918559 NA non-coding upstream 40179 26205468 ~ 26205774 (-)
G1915836 NA other downstream 2410999 23751843 ~ 23752463 (-)
G1913663 NA other downstream 4291313 21871253 ~ 21872149 (-)
G1913665 NA other downstream 4299188 21863588 ~ 21864274 (-)
G1912470 NA other downstream 5187226 20972679 ~ 20976236 (-)
G1911862 NA other downstream 5702025 20460668 ~ 20461437 (-)
LOC110504098 LOC106613118 other upstream 745495 26910083 ~ 26935725 (-)
G1919707 NA other upstream 1164161 27329450 ~ 27331899 (-)
G1920555 NA other upstream 1855041 28020330 ~ 28022222 (-)
G1920872 NA other upstream 2366754 28532043 ~ 28532321 (-)

Expression


Co-expression Network