XLOC_037974


Basic Information

Item Value
gene id XLOC_037974
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33201515 ~ 33202904 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075397
ATAAAAGCAGGACTCTTTCTGAAACGTTACTCAAGAAACACCAAAGAAACACCATCTGAACACCAAGGTCAGTTTTTACAGCGACCTTCTAAATAAAgtattgggtcacactttatattgatggttcgtttgttgaatttaagttacattgcatctacatgccaacttattctcattagattataagtagaatgTTAGGTTGAggttaaggttagtgtaagttaacatgtacttgcaaagtttcttctagtcagttaaatgtctgtttagcagcagtaccaacagatattaagcagacagtctactaatactcaaatggactatgAAACTAATGTGTTACCAAGTATTGTTGTACTGTTAAATACACTGAGAATTCACAGTGTGtagaatatgaataaatactgtacatgaactTTTCTAGCTCATTTTCAGGTTCATCATGGCAATGCTGAAAAATATTCTACTCCTTTTTGCTGCTTTTGCCAAACTATTGATATTTTGTAGCTTTACTGTATAAAGATGGATATAGCAGGAAATTGTGCAGCACAATAAAACAAGCTATACATAaagataattattttaaaaagtaatcataaatacaatatttttgtgaATATTAAAGCCCTAATGTTTAAGTACTAAATGCAGTTAATTTAGTTGAAAGATGCCCCTATGGATGGAAAAGTTTGGAGTCCGATGCTACAAGTTCTTCTCTCAGTCAGTTAACTGGGTCACCGCAGAGGTAGTGCTGGATAAAGTCATTTTTAAGGGAAAATATTTTCTGCACATTAATAAATCTCAGTTAATTtaactttgtttaaaaatgttgttattcCCACAAATTTCATACTGAACACTACAAATCTGTCTTTTTAGAGAAACTGTGAAAGTTGCATCATGAAACTAGCATCTTCAACCAATAAAGCACAACATGATTTTCTGCTGAGTCTGGTGcctccaaacacacatgcttgGATTGGTTCTCATGATGCTGAACAAGTTAGTTATGTCTTCTAATCAACCCAGAAAAACTTGTTCAACTGCACTGgtgacattttgtttattttagtgctttGATGTCCTCAAAAATTAGCTTAATACTGGAGTCTGTATAACTAGGCTTTTCTTTCAGTAGGAAGAACAGTGGTTGTGAAATGATGGATCTGCATTTGACTACACCAACTGATGCTCTGGACAACCCAACAATTCTGGTGTTGAGAACTGCTTGGAGATCAGTTTTACCTGTAAGAATGCTGCATGGTTTGCTTTCAATACTGATTCACTACCATAATCTGGGGGctatttcataaaagtggttaaGAAAAGCAGGGATTAAAGTCAAAAGCCTGACTTTAATAAGCCAAACTAAACGTCCacgcttaaattggtt
>TCONS_00074517
TGCCCCTATGGATGGAAAAGTTTGGAGTCCGATGCTACAAGTTCTTCTCTCAGTCAGTTAACTGGGTCACCGCAGAGAGAAACTGTGAAAGTTGCATCATGAAACTAGCATCTTCAACCAATAAAGCACAACATGATTTTCTGCTGAGTCTGGTGcctccaaacacacatgcttgGATTGGTTCTCATGATGCTGAACAA

Function

GO:

id name namespace
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0021546 rhombomere development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0035270 endocrine system development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0048518 positive regulation of biological process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0031016 pancreas development biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0002065 columnar/cuboidal epithelial cell differentiation biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0002067 glandular epithelial cell differentiation biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0035883 enteroendocrine cell differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0061032 visceral serous pericardium development biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0061564 axon development biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0048934 peripheral nervous system neuron differentiation biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060039 pericardium development biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0031175 neuron projection development biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000115642

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075397 False 1390 lncRNA 0.34 1 33201515 33202904
TCONS_00074517 True 200 mRNA 0.44 2 33201906 33202239

Neighbor

gene id symbol gene type direction distance location
XLOC_037973 NA coding downstream 22499 33177648 ~ 33179016 (-)
XLOC_037972 slc5a3b coding downstream 64525 33134882 ~ 33136990 (-)
XLOC_037970 NA coding downstream 79401 33110204 ~ 33122114 (-)
XLOC_037971 si:ch211-125e6.8 coding downstream 79842 33115926 ~ 33121673 (-)
XLOC_037969 casq2 coding downstream 94278 33097289 ~ 33107237 (-)
XLOC_037975 BX545856.1 coding upstream 44298 33247202 ~ 33251006 (-)
XLOC_037976 rpl8 coding upstream 120200 33323104 ~ 33329787 (-)
XLOC_037977 NA coding upstream 153747 33356651 ~ 33359044 (-)
XLOC_037978 caska coding upstream 163779 33366683 ~ 33608427 (-)
XLOC_037979 mao coding upstream 458060 33660964 ~ 33725972 (-)
XLOC_037966 NA non-coding downstream 260287 32937829 ~ 32941228 (-)
XLOC_037964 CT030044.2 non-coding downstream 316334 32883291 ~ 32885181 (-)
XLOC_037958 NA non-coding downstream 405631 32761062 ~ 32795884 (-)
XLOC_037984 dre-mir-221 non-coding upstream 718028 33920932 ~ 33921024 (-)
XLOC_037985 dre-mir-222a non-coding upstream 718560 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding upstream 739289 33942193 ~ 33943136 (-)

Expression


Co-expression Network