LOC118944059 (LOC106613133)


Basic Information

Item Value
gene id LOC118944059
gene name LOC106613133
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 27955249 ~ 27958792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961683.1
TATTATGGGGCTTGGAATTTCTTCGCGTTACGACATGATTACGGCCGCCGCGGACGCTGTTATAATTACGTCATAGATGGCCGCAAGTTTACGTCATAGTAAAACAGTTGAAATATTCCCGCAAGATTCACATTTCGATCACACACCGACGTGCTGAAGAACGATATCTCAGCACATAAAATACAACTAGGAATCACTTATCTAATACAATAATGCCTGGTACTGATTCTGAATCTGGCTGTTGGCCACGCATGAGATCTTCAAAGAAGCGCTCCAACCCCAAAGCCAAACACACAGGAAAGGAAATAGGCGCTCAGGATGCCCAGACCAAAGCTGAGCTAGACCCGATGACCCGCTCCCTGGCTCTCCACCTGTGCTGCCCATCCTGTGAcactctcctcctccagcctgTGTCTCTGCCCTGTGGCCACTGCCTCTGCCAGCCCTGCCTGGAAGGCATCCGCAATAAGCCCTCCAGCACCAAGGCCTCTGATGCCCAACAGGCCCAGCCCTACTCCCAGTGCCCCAGTTGCCTGGTTCACTACTCCCTCCAGCCTGGCGGGGCCTGGCCCTTCCCAGAGAATCTTCTTCTGGCCAACGTATCTGAGCAGCTCCTAGAGAGGCTGGAGGGCCTGAGGCGGGTGAAGCAACCCAAAAACACCCGGGCCAAGGACACATCCCTGAGGGTGACCACCTGCGAGATCTGCTCTAAGCAGCGCGAGGCCCAGAGCTACTGCCGCACCTGTGGCCTCAACAACTGTGCCAAGTACCTGAGAAAACTCCATGGCAACCAGGCATTCCAGGCCCACGTGCTGACGGAGCCCGTGGAGGGTGGGTGCCGCGATCCATGCCCCACCCACCACGACAGCTCCCTGTCCCACTGTTGCCTTGACGATGGAGCTCTGGGGTGCCAGGAGTGTATGGAACAGGGGCACCAGGGGCATGACGTGTCACCCGTCCACGAGGCCCGCGCCCGCAGGGAGGTGGGCATCCGCAATTCACTGGAGCAGGCTGAGAAGGTGAAGTCCCAGTGTGAAGCCGACATGGTGTCCATGGATCAGTTGAGGGTCCGAACGGGCTCCGACGGTGCCGAGCTGAGACACCACGTGCGCGAGGGCTTCCTGTCTCTCCGTAATGTCCTGCTAGACCAGGAGGCGGCACTGCTCTCCCACCTGGACATCCTGACCTCCAGTACCTGCAGCGGTGCCAGGGACTTCCTCCAGACCTCTGCTCCACTCCTTGGCTCCCTGACTGGGCTGGAGGTGATCTCTGAGCAGGCCCTCCTGGAGCCCGACACCGTGGCCTTCCTGACTGGGGCCATGGCTCTGACCCAGTGGCTGCAGAAGGTCAACGGGGACATCCACCGCCCTGCCCTGACTCTCCAGGAGGGGGAGCCCTTCAAGGGGGTGAAGATGGACTTTGACACCCTCCTTAGAGACCTGCAGGGCCTTCTGGTGACCCACCTCCACTGGAAGAGCCCTGAAGTGGATGCAGTGGTTGCATCAGCGACCAGTGTGGAGTCAGACATTTTGGAGGGGTGCTGCGAGGTGTTGCAGGTGCCATCCTGCCCAGGGACCCCCCACCGCACCCTGGCCCTGGCGGACTCCCCCCTGAGCCCCCGGAACCCCAAGAGCCCCAGAAAGCTGGTGATGGAGGAACAGCTGGGCCTGTCGGCTGGGGACTGCAGCGATAAGGAGCGCCACCTGCTGCCCAGGCCCCCCATCATCTACCAGCACATCGTCAGCAGAGACACTGTGGAGATCTTCTGGATGCTGCCCATGGGCGAGGAGGTGGAGACCTTTGACATCCACTTCCAGGATGCTGTTACCGTGGGGATGGCcatggaggaggggaagggagtggTCCTGGTGGGGCTGAAGACCTGCAACCTGCAGACAGCCGGGCTCCGCCTAGACACACACTACCTGTTCCGGGCACGCTCTGTCAACAGCCATGGGGCCGGGGAGTGGAGCTCCTCCTACAGGGTGAACACCGAGCGCCAGGGAGACGAGGCCAAGGCAGCCGTGACACAGGAAATCTAACTCTTACAACAGGAAATGAAGAACCCACACATCATATGTCACTTACAATCTGTCTTTTCCACATACACTGCATTATCAGGCAGAAACATACACTGCATTATCAGGCAGAAACATACACTGCATTATCAGGCAGAAACATACACTGCATTATCAGGCAGAAACATACACTGCATTATCAGGCAGAAACATACATTGCATTATCAGGCAGAAACATACACTGCATTATCAGGCAGAAACATACATTGCATTATCAGGCAGAAACATACACTGCATTATCAGACAGAAACATACATTGCATTATCAGGCAGAAACATACACTGCATTATCAGACAGAAACATACACTGCATTATCAGGCAGAAACATACATTGCATAATAAAAATATAGCAAGCTACTTTGAAAAAGTGAGCTATTGAATTTTTTCACCAAACACAATGCTTTgtggaatttgttcttaactaataAATAATGGTTAC

Function

NR:

description
PREDICTED: tripartite motif-containing protein 42-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961683.1 True 2517 mRNA 0.56 6 27955249 27958792
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110504119 LOC106613129 coding downstream 6330 27895111 ~ 27948919 (-)
LOC110504117 LOC106613131 coding downstream 108615 27820764 ~ 27846634 (-)
sgpp2 sgpp2 coding downstream 673719 27263515 ~ 27281530 (-)
LOC110504109 LOC106581313 coding downstream 714770 27236183 ~ 27240479 (-)
LOC110504108 acsl3 coding downstream 725395 27183189 ~ 27229854 (-)
LOC110503384 LOC106613128 coding upstream 372 27959164 ~ 28447338 (-)
mrps22 LOC106613113 coding upstream 596000 28554792 ~ 28565782 (-)
LOC110504137 LOC106613171 coding upstream 878933 28837725 ~ 28839466 (-)
LOC110504136 LOC106581357 coding upstream 883964 28842756 ~ 28844983 (-)
LOC110504132 LOC106613165 coding upstream 917643 28876435 ~ 28884570 (-)
G1920500 NA non-coding downstream 61076 27886937 ~ 27894173 (-)
G1920458 NA non-coding downstream 130182 27785067 ~ 27825067 (-)
G1920467 NA non-coding downstream 143674 27807055 ~ 27811575 (-)
G1920448 NA non-coding downstream 182136 27771782 ~ 27773113 (-)
G1919974 NA non-coding downstream 328593 27626170 ~ 27626656 (-)
G1920535 NA non-coding upstream 22291 27981083 ~ 27998173 (-)
G1920555 NA non-coding upstream 62778 28020330 ~ 28022222 (-)
G1920625 NA non-coding upstream 175435 28134227 ~ 28135914 (-)
G1920634 NA non-coding upstream 188088 28146880 ~ 28148500 (-)
G1920637 NA non-coding upstream 192774 28151566 ~ 28162831 (-)
G1919707 NA other downstream 623350 27329450 ~ 27331899 (-)
LOC110504098 LOC106613118 other downstream 1019524 26910083 ~ 26935725 (-)
LOC110503381 LOC106613064 other downstream 1743378 26208892 ~ 26241410 (-)
LOC110504083 NA other downstream 1790004 26163462 ~ 26165289 (-)
G1915836 NA other downstream 4202786 23751843 ~ 23752463 (-)
G1920872 NA other upstream 573251 28532043 ~ 28532321 (-)
G1921283 NA other upstream 984457 28943249 ~ 28944607 (-)
G1921496 NA other upstream 1167496 29126288 ~ 29126537 (-)

Expression

LOC118944059(LOC106613133) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC118944059(LOC106613133) Expression in each Bioproject

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LOC118944059(LOC106613133) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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Co-expression Network