Item | Value |
---|---|
gene id | LOC110503161 |
gene name | LOC106613141 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048588.1 |
NCBI id | CM023242.2 |
chromosome length | 45930806 |
location | 30497631 ~ 30512825 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
amyloid beta A4 precursor protein-binding family B member 1-like isoform X1 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021581511.2 | False | 4288 | mRNA | 0.46 | 14 | 30497631 | 30512825 |
XM_021581512.2 | False | 4279 | mRNA | 0.46 | 15 | 30497631 | 30512825 |
XM_021581513.2 | False | 4273 | mRNA | 0.46 | 14 | 30497631 | 30512825 |
XM_021581509.2 | True | 4293 | mRNA | 0.46 | 15 | 30497632 | 30512825 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110503160 | ilk | coding | upstream | 501 | 30475992 ~ 30497130 (+) |
LOC110503157 | LOC106592784 | coding | upstream | 68621 | 30425035 ~ 30429010 (+) |
LOC110504126 | LOC106613152 | coding | upstream | 711449 | 29784418 ~ 29786182 (+) |
LOC118944007 | NA | coding | upstream | 746168 | 29664177 ~ 29751463 (+) |
LOC110503387 | fat3 | coding | upstream | 838226 | 29311985 ~ 29659405 (+) |
LOC118944034 | NA | coding | downstream | 29270 | 30542095 ~ 30545167 (+) |
LOC110503393 | robo1 | coding | downstream | 195017 | 30707842 ~ 31236110 (+) |
LOC110503469 | LOC106613200 | coding | downstream | 1517583 | 32030408 ~ 32036955 (+) |
LOC118944035 | NA | coding | downstream | 1532328 | 32045153 ~ 32049690 (+) |
LOC110503168 | LOC106613190 | coding | downstream | 1602171 | 32114839 ~ 32117555 (+) |
G1922866 | NA | non-coding | upstream | 33013 | 30463608 ~ 30464618 (+) |
G1922862 | NA | non-coding | upstream | 40391 | 30455427 ~ 30457240 (+) |
G1922857 | NA | non-coding | upstream | 48191 | 30449241 ~ 30449440 (+) |
G1922848 | NA | non-coding | upstream | 62131 | 30435205 ~ 30435500 (+) |
G1922846 | NA | non-coding | upstream | 63854 | 30433567 ~ 30433777 (+) |
G1922913 | NA | non-coding | downstream | 50887 | 30563712 ~ 30564744 (+) |
G1922938 | NA | non-coding | downstream | 98680 | 30611505 ~ 30611719 (+) |
G1922940 | NA | non-coding | downstream | 102393 | 30615218 ~ 30615655 (+) |
G1922946 | NA | non-coding | downstream | 113717 | 30626542 ~ 30626839 (+) |
G1922950 | NA | non-coding | downstream | 119542 | 30632367 ~ 30632586 (+) |
G1922637 | NA | other | upstream | 208291 | 30287559 ~ 30289340 (+) |
G1922041 | LOC106613152 | other | upstream | 712344 | 29709880 ~ 29785287 (+) |
LOC110503390 | efhd1 | other | upstream | 1562750 | 28927758 ~ 28943440 (+) |
G1920101 | LOC106613131 | other | upstream | 2674881 | 27820794 ~ 27822750 (+) |
G1919949 | NA | other | upstream | 2879168 | 27617023 ~ 27618463 (+) |
G1923728 | NA | other | downstream | 769118 | 31281943 ~ 31282157 (+) |
G1923824 | NA | other | downstream | 941505 | 31454330 ~ 31455689 (+) |
G1924021 | NA | other | downstream | 1390702 | 31903527 ~ 31908662 (+) |
G1924661 | NA | other | downstream | 1709866 | 32222691 ~ 32223006 (+) |
LOC110503398 | LOC106591258 | other | downstream | 1898827 | 32366174 ~ 32425791 (+) |