Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503393 |
| gene name | robo1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 30707842 ~ 31236110 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| robo1 | Predicted to enable axon guidance receptor activity. Acts upstream of or within axon guidance and endocardial progenitor cell migration to the midline involved in heart field formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; epidermis; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human ROBO1 (roundabout guidance receptor 1). |
| description |
|---|
| roundabout homolog 1-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036961725.1 | False | 6407 | mRNA | 0.55 | 31 | 30707842 | 31236110 |
| XM_036961721.1 | False | 6799 | mRNA | 0.55 | 32 | 30707843 | 31236110 |
| XM_036961723.1 | False | 6790 | mRNA | 0.55 | 31 | 30707843 | 31236110 |
| XM_036961722.1 | False | 6747 | mRNA | 0.55 | 32 | 30707844 | 31236110 |
| XM_036961724.1 | False | 7228 | mRNA | 0.54 | 30 | 30915922 | 31236110 |
| TU2198978 | False | 324 | lncRNA | 0.42 | 2 | 31182867 | 31236033 |
| TU2198975 | True | 589 | lncRNA | 0.39 | 2 | 31234691 | 31235418 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944034 | NA | coding | upstream | 162675 | 30542095 ~ 30545167 (+) |
| LOC110503161 | LOC106613141 | coding | upstream | 195017 | 30497631 ~ 30512825 (+) |
| LOC110503160 | ilk | coding | upstream | 210712 | 30475992 ~ 30497130 (+) |
| LOC110503157 | LOC106592784 | coding | upstream | 278832 | 30425035 ~ 30429010 (+) |
| LOC110504126 | LOC106613152 | coding | upstream | 921660 | 29784418 ~ 29786182 (+) |
| LOC110503469 | LOC106613200 | coding | downstream | 794298 | 32030408 ~ 32036955 (+) |
| LOC118944035 | NA | coding | downstream | 809043 | 32045153 ~ 32049690 (+) |
| LOC110503168 | LOC106613190 | coding | downstream | 878886 | 32114839 ~ 32117555 (+) |
| LOC110503170 | LOC106613188 | coding | downstream | 898693 | 32134803 ~ 32136894 (+) |
| LOC110503470 | LOC106613198 | coding | downstream | 921777 | 32157887 ~ 32159207 (+) |
| G1922984 | NA | non-coding | upstream | 20162 | 30687447 ~ 30687680 (+) |
| G1922966 | NA | non-coding | upstream | 49114 | 30658316 ~ 30658728 (+) |
| G1922967 | NA | non-coding | upstream | 50035 | 30657588 ~ 30657807 (+) |
| G1922962 | NA | non-coding | upstream | 56885 | 30650728 ~ 30650957 (+) |
| G1922961 | NA | non-coding | upstream | 60942 | 30646645 ~ 30646900 (+) |
| G1923275 | NA | non-coding | downstream | 6540 | 31242650 ~ 31244362 (+) |
| G1923282 | NA | non-coding | downstream | 19488 | 31255598 ~ 31255975 (+) |
| G1923289 | NA | non-coding | downstream | 29099 | 31265209 ~ 31265506 (+) |
| G1923740 | NA | non-coding | downstream | 57892 | 31294002 ~ 31297272 (+) |
| G1923757 | LOC106581381 | non-coding | downstream | 79216 | 31315326 ~ 31316500 (+) |
| G1922637 | NA | other | upstream | 418502 | 30287559 ~ 30289340 (+) |
| G1922041 | LOC106613152 | other | upstream | 922555 | 29709880 ~ 29785287 (+) |
| LOC110503390 | efhd1 | other | upstream | 1772961 | 28927758 ~ 28943440 (+) |
| G1920101 | LOC106613131 | other | upstream | 2885092 | 27820794 ~ 27822750 (+) |
| G1919949 | NA | other | upstream | 3089379 | 27617023 ~ 27618463 (+) |
| G1923728 | NA | other | downstream | 45833 | 31281943 ~ 31282157 (+) |
| G1923824 | NA | other | downstream | 218220 | 31454330 ~ 31455689 (+) |
| G1924021 | NA | other | downstream | 667417 | 31903527 ~ 31908662 (+) |
| G1924661 | NA | other | downstream | 986581 | 32222691 ~ 32223006 (+) |
| LOC110503398 | LOC106591258 | other | downstream | 1175542 | 32366174 ~ 32425791 (+) |
| G1923209 | NA | non-coding | upstream | 96285 | 31085170 ~ 31086582 (+) |
| G1923206 | NA | non-coding | upstream | 102954 | 31079344 ~ 31079913 (+) |
| G1923164 | NA | non-coding | upstream | 175654 | 31006138 ~ 31007213 (+) |
| G1923028 | NA | non-coding | upstream | 405187 | 30777415 ~ 30777680 (+) |
| G1923005 | NA | non-coding | upstream | 467269 | 30714972 ~ 30715598 (+) |
