LOC110503171 (LOC106613199)


Basic Information

Item Value
gene id LOC110503171
gene name LOC106613199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 32144469 ~ 32146485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581527.2
TTCGCCCTGCGTTGCTAAAAGGATGGACAACAACATGTCATTTCCAAGCCATATCCTTCAAATCCAGGGTTTTGAATTCTCACAGACATTCATGTATCCAATTTTTTTCTCCATGCTGTTTGTTTATCTCTCCCTCCTTGTGTCTAACATTGGTGTCCTGGTAGTCATCATCAAAGAAAGAAATTTGCACCAACCAATGTACATCCtcttctgtaacctgtctgtaaatgATCTGATTGGCAACACTGTCTTGTTGCCTCGCCTCATGGCTGATATTGTTTCAACTGATAGGTTTATCACGTACAGCCAATGTGTTACTCAGGCCTTTTTCAGTCACATGTTTGGATCAGCCTCACATATGATACTGATCATTATGGCCTTTGACAGGTATGTGGCCATATGTCACCCATTAAGGTACACGTCCATAATGACAACCAAAACTGTAGTTacgctgtctgtgtctgcttggggggctTCCCTTGTGTTAGTGTCTGTCCTACTGGGTCTCACCATAAGGCTTTCCCGCTGCACTTCAATCATTCGAAATGTTTATTGTGACAATGCATCATTGTTCAAGCTGTCCTGTGAGAACGTTTCAATCAACAACATCTATGGACTCTTTTTCACTGTGCTGCTCTTTACTTCTTCAATGGGAAGCATAGCTGTTACTTATATCAGGATTGCTGTGATTTGCTGGACCAAGAAAAGCAAGGAACTGAACAACAGAGCGTTGCAGACCTGTGCAAGCCACCTGGTGGTGTATCTCATTATGCTGTGGAGTGGGTTTCTAACCATCATACTGCATCGCTTTCCAGACTATCCATATTTGAGAAAACTGGCTTCTGTTCTATTTCATGTCGTCCCTGCTCATTTTAATCCAATTATCTACGGCTTGCAAACAAAGTCATTGAGGCAGAAAATTAAACAAATACTCTGTCGGAAAGTTACACACTCATAATACAGATATTACTTTGTAAATCAAATCGACAGGCTTGATTATTCTGGTCCTAAAACAGCCAAAATAAAATGGTTTGTATTTCAACACATACCAGTCTTAAAAGCTGTGTTCAAGGTACTTTTCTAACATATTCAACATCTCTAGCGCCAGcccaacatcaacatacagtatgtgaaaatGGCACATTTCTATGTGTTGTAGTCAAAAAGATAGAGGAACAAAAGTGTTTCTGATGACATCATCTCCTGTGTTTCTTGTGATTTGAACCAATTATGTGCAGGCAATGAGCAGAAATAGTTGTGGCAGCAATTGCAATATTTCCCTCTAAAGGTTATGTTTTGCCATTTTCACATAttttgatgttggggtggtgatggagatgatgaatatgaagtttaaATAATTGTTTTTATTACCCTTTAATGGTTCTGTTCTGTAAGATATTAGGAGGTATGAATGAGGGAACCGTAAAGGTGATGATGAGCATGCGTTGGTCATCAGGCTTTCCTGTCTGTGCTTAGTGGTTACCTTGTTGCCAGTCAAAATGGCATCTCAATTGAGACCTCTAGTGTCTGTTAGCTGAAAACGCAGAGGGACGTTGCAGGGATGCTCAAATCCAAGCCTGAAGGTCTGCAAAATCCAAGCTTGAAGGTCTGCAAATCCAAGCCTGAAGGTCTGCAAATCCAAGCCTGAAGGTCTGCAAATCCAAAGCCTGAAGGTCTGCAAATCCAAGCCTGAAGGCCTGCAAATCCAAGCCTGAAGGTCTGCAAATCCAAGCCTGAAGGTCTGCAAATCCAAGCCTGAAAGTCTGGTGAATTGAGAGATTGTCACTGATGGCCAGAAATTCCACTCACCTGTAACGGATTCACTCTATAGAGCCAACCTGGAACAGAGATACTGATAAAGAGCTTCCATCTTTAGCCGGCCTCCGCCCTGTCCTGAACCTTAGACAGTGTCACTTATTGGCTACCAAaaggtactctaccctgcaccttagagactgctgcgctatgtacatacagtagtcattaaataatgtaataatgtttacatactttc

Function

NR:

description
olfactory receptor 52E4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581527.2 True 2017 mRNA 0.42 1 32144469 32146485
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503169 LOC106613189 coding downstream 14721 32118829 ~ 32129748 (-)
LOC110503167 stim1 coding downstream 37436 32050391 ~ 32107033 (-)
LOC110503164 rblce coding downstream 207181 31936281 ~ 31937288 (-)
LOC110503394 LOC106581381 coding downstream 243958 31293956 ~ 31900511 (-)
LOC110503468 LOC106613175 coding downstream 1501900 30641448 ~ 30642569 (-)
LOC110503475 NA coding upstream 125831 32272316 ~ 32275256 (-)
aasdhppt aasdhppt coding upstream 305924 32452409 ~ 32464742 (-)
gria4a gria4 coding upstream 329995 32476435 ~ 32635735 (-)
LOC110503410 LOC106613204 coding upstream 764679 32911164 ~ 32919166 (-)
LOC110503411 dync2h1 coding upstream 780093 32926578 ~ 33152283 (-)
G1924571 LOC106613188 non-coding downstream 9354 32134867 ~ 32135115 (-)
G1924567 LOC106613190 non-coding downstream 26925 32115307 ~ 32117544 (-)
G1924564 NA non-coding downstream 36640 32107624 ~ 32107829 (-)
G1924552 NA non-coding downstream 74360 32067586 ~ 32070109 (-)
G1924514 NA non-coding downstream 139133 32004845 ~ 32005336 (-)
G1924616 NA non-coding upstream 20582 32167067 ~ 32167286 (-)
G1924656 NA non-coding upstream 71520 32218005 ~ 32218242 (-)
G1924664 NA non-coding upstream 78009 32224494 ~ 32224748 (-)
G1924677 NA non-coding upstream 88156 32234641 ~ 32234967 (-)
G1924694 NA non-coding upstream 113413 32259898 ~ 32260109 (-)
G1924540 LOC106581383 other downstream 104264 32038923 ~ 32040205 (-)
G1924470 NA other downstream 235878 31903633 ~ 31908591 (-)
LOC110503392 LOC106613147 other downstream 1833916 30307882 ~ 30310553 (-)
G1922783 NA other downstream 1842426 30301617 ~ 30302043 (-)
G1925165 NA other upstream 601396 32747881 ~ 32748126 (-)
LOC110503210 grm5 other upstream 1431220 33449765 ~ 33582717 (-)
G1926633 NA other upstream 2163823 34310308 ~ 34311965 (-)
G1927182 LOC106581473 other upstream 2769774 34916259 ~ 34925330 (-)
G1927252 NA other upstream 2822584 34969069 ~ 34969720 (-)

Expression

LOC110503171(LOC106613199) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110503171(LOC106613199) Expression in each Bioproject

Bar chart with 15 bars.
LOC110503171(LOC106613199) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
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Co-expression Network