XLOC_037982 (fundc1)


Basic Information

Item Value
gene id XLOC_037982
gene name fundc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33783549 ~ 33785200 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074536
ATTTTACGTAAGAGCTTCCGCGGTTGCGAGCGTCGTGAACGCAGCCTCATAAAATGGCGGATCGCGGCGAAGATGCAGAGAGTGAAGATGAATTGTATGAAGTGGTCAACATCACAGATTATGCCAGGAGGCATCAATGGTGGAGTCGAGTATTTGGTAACAGCACAGGTCCCATTGCAGAAAAATACTCTGTGGCTTCACAAATCATGATGGGTGGAGTGTCCGGATGGTGTGCTGGATATCTCTTTCAGAGAGTTGGAAAGCTTGTGGCTACTGCTGTTGGAGGAGGATTTCTTTTGTTACAAATTGCCAATCATAGTGGCTATGTGCAGGTGGACTGGAGGAAAGTGGAAAAGGATGTCAATAAAGCTAAAAAGCATTTGAAGAAAAATGCCAAAAAAGCTGCTCCTGAGCTCAATACCTTTATAGAAGATTCTACAGAGTTTGTGAAGAGGAATATTGTTATCTCAGGAGGATTTGTTGGAGGATTTCTGCTAGGCCTGGCATCCTAAATGAAACCTGGATGTACTGTATTGCCTCTGATATGAGTACAGTAATATTGTCCCTTATCTTGGTATCACAGTGATACAGCACTGAAACATGTTGTTTGTTCAGAAGCAGTGAGTGCAATGGACATTTGCTGGACTTTTTTAATATGTTCCTCTACAATGTTATACAATAGCTAAAACATCCTGCAGGAGAGAGATATATTGTGCCAATAACTTTATAGAAAATTGTggcttttattttgttcattttattttaattagtgatAATGCATTCATTTGTTACATGTACAACTACTGAAGTGTTTCATATTGTATTTTGCTTTTGACGGTACATTATTTGAGGTAGATGTATCATTTCCCTAATATATTGTCAAAATGCATGAATTGTTTTGACGTAAAGATAAAAATAATGTTGTGGAAATAATAAAAAGTCTTTCTGGTTATGTATA
>TCONS_00074537
CCTTAATATTCCTgattgttataaataataaaaaaatgtccttCTCTAGGTGTGCTGGATATCTCTTTCAGAGAGTTGGAAAGCTTGTGGCTACTGCTGTTGGAGGAGGATTTCTTTTGTTACAAATTGCCAATCATAGTGGCTATGTGCAGGTGGACTGGAGGAAAGTGGAAAAGGATGTCAATAAAGCTAAAAAGCATTTGAAGAAAAATGCCAAAAAAGCTGCTCCTGAGCTCAATACCTTTATAGAAGATTCTACAGAGTTTGTGAAGAGGAATATTGTTATCTCAGGAGGATTTGTTGGAGGATTTCTGCTAGGCCTGGCATCCTAAATGAAACCTGGATGTACTGTATTGCCTCTGATATGAGTACAGTAATATTGTCCCTTATCTTGGTATCACAGTGATACAGCACTGAAACATGTTGTTTGTTCAGAAGCAGTGAGTGCAATGGACATTTGCTGGACTTTTTTAATATGTTCCTCTACAATGTTATACAATAGCTAAAACATCCTGCAGGAGAGAGATATATTGTGCCAATAACTTTATAGAAAATTGTggcttttattttgttcattttattttaattagtgatAATGCATTCATTTGTTACATGTACAACTACTGAAGTGTTTCATATTGTATTTTGCTTTTGACGGTACATTATTTGAGGTAGATGTATCATTTCCCTAATATATTGTCAAAATGCATGAATTGTTTTGACGTAAAGATAAAAATAATGTTGTGGAAATAATAAAAAGTCTTTCTGGTTA
>TCONS_00075399
CATAAAATGGCGGATCGCGGCGAAGATGCAGAGAGTGAAGATGAATTGTATGAAGTGGTCAACATCACAGATTATGCCAGGAGGCATCAATGGTGGAGTCGAGTATTTGGTAACAGCACAGGTCCCATTGCAGAAAAATACTCTGTGGCTTCACAAATCATGATGGGTGGAGTGTCCGGATGGTTAGTGTTCATGTGAATGCTTTAATTTCTAATAAAACCCTTAATATTCCTgattgttataaataataaaaaaatgtccttCTCTAGGTGTGCTGGATATCTCTTTCAGAGAGTTGGAAAGCTTGTGGCTACTGCTGTTGGAGGAGGATTTCTTTTGTTACAAATTGCCAATCATAGTGGCTATGTGCAGGTGGACTGGAGGAAAGTGGAAAAGGATGTCAATAAAGCTAAAAAGCATTTGAAGAAAAATGCCAAAAAAGCTGCTCCTGAGCTCAATACCTTTATAGAAGATTCTACAGAGTTTGTGAAGAGGAATATTGTTATCTCAGGAGGATTTGTTGGAGGATTTCTGCTAGGCCTGGCATCCTAAATGAAACCTGGATGTACTGTATTGCCTCTGATATGAGTACAGTAATATTGTCCCTTATCTTGGTATCACAGTGATACAGCACTGAAACATGTTGTTTGTTCAGAAGCAGTGAGTGCAATGGACATTTGCTGGACTTTTTTAATATGTTCCTCTACAATGTTATACAATAGCTAAAACATCCTGCAGGAGAGAGATATATTGTGCCAATAACTTTATAGAAAATTGTggcttttattttgttcattttattttaattagtgatAATGCATTCATTTGTTACATGTACAACTACTGAAGTGTTTCATATTGTATTTTGCTTTTGACGGTACATTATTTGAGGTAGATGTATCATTTCCCTAATATATTGTCAAAATGCATGAATTGTTTTGACGTAAAGATAAAAATAATGTTGTGGAAATAATAAAAAGTCTTTCTGGTTA
>TCONS_00074538
AGTCTCGATTGGCAGCGTGTTTGTTTCACCGGATTTATCGCGTGCAACAAGATTCCGAGTGTTTACACCGTAGAAGAGCAGCATAGGTTTCGTTTATTTTGCCAGCAGCCGTTCAGTCTATACAGATACAACGCAGCTAAATTCAACCATACTGTTTTCATTCTCATTCGTCTTTCCATTCGCGTGCTGATGCAGAGAGTGAAGATGAATTGTATGAAGTGGTCAACATCACAGATTATGCCAGGAGGCATCAATGGTGGAGTCGAGTATTTGGTAACAGCACAGGTCCCATTGCAGAAAAATACTCTGTGGCTTCACAAATCATGATGGGTGGAGTGTCCGGATGGTGTGCTGGATATCTCTTTCAGAGAGTTGGAAAGCTTGTGGCTACTGCTGTTGGAGGAGGATTTCTTTTGTTACAAATTGCCAATCATAGTGGCTATGTGCAGGTGGACTGGAGGAAAGTGGAAAAGGATGTCAATAAAGCTAAAAAGCATTTGAAGAAAAATGCCAAAAAAGCTGCTCCTGAGCTCAATACCTTTATAGAAGATTCTACAGAGTTTGTGAAGAGGAATATTGTTATCTCAGGAGGATTTGTTGGAGGATTTCTGCTAGGCCTGGCATCCTAAATGAAACCTGGATGTACTGTATTGCCTCTGATATGAGTACAGTAATATTGTCCCTTATCTTGGTATCACAGTGATACAGCACTGAAACATGTTGTTTGTTCAGAAGCAGTGAGTGCAATGGACATTTGCTGGACTTTTTTAATATGTTCCTCTACAATGTTATACAATAGCTAAAACATCCTGCA
>TCONS_00074539
CATAAAATGGCGGATCGCGGCGAAGATGCAGAGAGTGAAGATGAATTGTATGAAGTGGTCAACATCACAGATTATGCCAGGAGGCATCAATGGTGGAGTCGAGTATTTGGTAACAGCACAGGTCCCATTGCAGAAAAATACTCTGTGGCTTCACAAATCATGATGGGTGGAGTGTCCGGATGGTTAGTGTTCATGTGAATGCTTTAATTTCTAATAAAACCCTTAATATTCCTgattgttataaataataaaaaaatgtccttCTCTAGGTGTGCTGGATATCTCTTTCAGAGAGTTGGAAAGCTTGTGGCTACTGCTGTTGGAGGAGGATTTCTTTTGTTACAAATTGCCAATCATAGTGGCTATGTGCAGGTGGACTGGAGGAAAGTGGAAAAGGATGTCAATAAAGCTAAAAAGCATTTGAAGAAAAATGCCAAAAAAGCTGCTCCTGAGCTCAATACCTTTATAGAAGATGTGGGTATACTTTCATATGCTTGTCATAATTTCATATACTATCTATTAGCTGTTATGACACTTCGCTTAACCTA

Function

symbol description
fundc1 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0001666 response to hypoxia biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04137 Mitophagy - animal
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040718-466 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000040822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074536 False 958 mRNA 0.38 5 33783549 33785200
TCONS_00074537 False 772 processed_transcript 0.34 3 33783555 33784507
TCONS_00075399 False 992 lncRNA 0.36 4 33783555 33785153
TCONS_00074538 False 814 mRNA 0.42 5 33783810 33785093
TCONS_00074539 True 548 lncRNA 0.39 3 33784088 33785153

Neighbor

gene id symbol gene type direction distance location
XLOC_037981 efhc2 coding downstream 1698 33758720 ~ 33781851 (-)
XLOC_037980 ndp coding downstream 33993 33734850 ~ 33749556 (-)
XLOC_037979 mao coding downstream 57577 33660964 ~ 33725972 (-)
XLOC_037978 caska coding downstream 175122 33366683 ~ 33608427 (-)
XLOC_037977 NA coding downstream 424505 33356651 ~ 33359044 (-)
XLOC_037983 dipk2b coding upstream 78323 33863523 ~ 33877514 (-)
XLOC_037984 dre-mir-221 coding upstream 135732 33920932 ~ 33921024 (-)
XLOC_037985 dre-mir-222a coding upstream 136264 33921464 ~ 33955939 (-)
XLOC_037986 NA coding upstream 156993 33942193 ~ 33943136 (-)
XLOC_037987 NA coding upstream 279309 34064509 ~ 34065606 (-)
XLOC_037975 BX545856.1 non-coding downstream 532543 33247202 ~ 33251006 (-)
XLOC_037974 NA non-coding downstream 580645 33201515 ~ 33202904 (-)
XLOC_037973 NA non-coding downstream 604533 33177648 ~ 33179016 (-)
XLOC_037970 NA non-coding downstream 661435 33110204 ~ 33122114 (-)
XLOC_037988 NA non-coding upstream 284536 34069736 ~ 34083226 (-)

Expression


Co-expression Network