XLOC_037985 (dre-mir-222a)


Basic Information

Item Value
gene id XLOC_037985
gene name dre-mir-222a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33921464 ~ 33955939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074544
GCCGGTGGCTTGTTCGGGTGCTCATGAGATGCTCAGTAGTCAGTGTAGATCCTGTGTCACAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCT
>TCONS_00075400
AATCGCTCAGCCCCTCGACTCAACCCTATAAGTACTCTGGCAGTCCCTATCCAGTGTATGACTGACTGTTTAGAGGCACAGAGAGAAAGACGGCCAGGGGAAACGGAGAGAATAGGAGGGGGCGGTAGAGAGTTTAAATTCAGTGACAGTGATAACAATGATATTATTCGTTCTCCGCTGAAACGGGGAAGCACTTTCAGACTCTACGGCACGCTTCCTCTGTCTCTATCGCTTTAAGAATGTTACTGATTAGTCGCTAAAGAATGCGAgtggaaagagagggagagagaagagAAGAAGCAGAGGCATGTGGGAGAGACACAGCACTGGAGCTCATATGGAGAAGACTGATAATTCTGAGCCGAGCGGGGTTTGGTTGTATTTTCCAGCGCCGTGAAGAGGCTGGACGGAGGGGGAAGTCGGGGACCCCGCACATGCAGCGCTCAGCCATCAGGAAATACTCTCTTCAGCCAGACAGAGGTCATTTAAAAAGGCTGAGTCCATTCAGATCACACAATGATCAATCTTAATTTAGGCGTTCGGGACGTCTGGAGTGGACGAGCGCTGCCGGTGGCTTGTTCGGG
>TCONS_00075401
TACAACACTTCCAGCATGACACTCGCAGAGAACGGCAAAAGCTcagccacaaacacacacatacatacacacacacacacagacacacaaacacagacaaagcAGCAGATCTTAACAGGATACTGTAGTCAGTCACAGGCACATGAGCACTGGAGGAAATGGAGTGACAAGAAAAAGGAAGACACAAATCACACCAAGCGTGCAGAGAAACAGATTGTCCGCTATCAGCGGTGATGGTGCGCGGAGGAAGAACGCGAACGCATGCAGCAAACTCAAACAAAAGCATCAGATGGCGATTCCTGGAATAGGACTTGATAAAACCGAATCTCACACTCATCCTGCACCGGGTCATTTAAAAAGGCTGAGTCCATTCAGATCACACAATGATCAATCTTAATTTAGGCGTTCGGGACGTCTGGAGTGGACGAGCGCTGCCGGTGGCTTGTTCGGG
>TCONS_00075001
GCATGACACTCGCAGAGAACGGCAAAAGCTcagccacaaacacacacatacatacacacacacacacagacacacaaacacagacaaagcAGCAGATCTTAACAGGATACTGTAGTCAGTCACAGGCACATGAGCACTGGAGGAAATGGAGTGACAAGAAAAAGGAAGACACAAATCACACCAAGCGTGCAGAGAAACAGATTGTCCGCTATCAGCGGTGATGGTGCGCGGAGGAAGAACGCGAACGCATGCAGCAAACTCAAACAAAAGGTGCGTCCTGtgtgttttatgattttattgtACCATAAGCTGCGGATTGTACATGCTTTGTTTAGCGTTTGCTTAATCCCTGTATCGTTTAAATTGCATGTACACAAAACTATAGCGGTAATACGCTACAAATATAAAACATGCTGTATATGAAGAATAATTTCTTGTTCTCGCTTCTTCCTGCATTTGTGTTGCTTTGTGTTTTAAACCGAGAACTTACAATGCCGCATGCACGAGACACACTTAGagcatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtattttATAGAGAGACAGGGAGACTGTGAAAAAGTGATTTAACCATTTGTCACGGACGTTTTATTTCCTTAttcatgttatttaatgtaaGGACCATTTGGTAGAGGGTGATGTATCCTTTTTTCCTCTTCTTGAAGTGAGGTTGGAGGGGAGGGTTTGTGAACTGAAGAAAAGGAaattcttgtgtgtgttttggaaTGCTGTTGCCCCGGGGGGACCGAAAGAATTGAGTTGGGGAATAAGAGAGAGGCGAGTTTAGAGAGGGGAAACAAGGGGGGACACATTTCCCCTTTCCTCTTTTTCTCCCCCCTAAATGACAAGGATAACAGCACAGCCTAGGAAGATGAAGTGCAGTGGCCAGACGCCTGCAAGTGGACTGAACGGACACATTATGTGTATAAAGATTCAACGAACCTCCTCACCCCAACACCCATCATTACAATTGGAGCAATTGGGTGTAAAAACTTTGAATTCATTGTTAGATTAGCTTAAATTAGAGGTAATAGTGTTGCTAAAGCAATTATTAAGCCACAATGCTCTGAATAAGCAATTAAAATTGTGCTTGCATATTTAATGAGTAATTAGGCTtatttaat
>TCONS_00075403
CTTCCCTGCTCACACACGCACCATGCAGCCATGGGGGTGGAGAGATGCTATGTAGTTAAACCCAAGGCAGCCTGTGGATACAACACTTCCAGCATGACACTCGCAGAGAACGGCAAAAGCTcagccacaaacacacacatacatacacacacacacacagacacacaaacacagacaaagcAGCAGATCTTAACAGGATACTGTAGTCAGTCACAGGCACATGAGCACTGGAGGAAATGGAGTGACAAGAAAAAGGAAGACACAAATCACACCAAGCGTGCAGTTAAAAAGAGATAAATGGAGCGCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000090347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074544 False 108 miRNA 0.52 1 33921464 33921571
TCONS_00075400 False 584 lncRNA 0.51 3 33921554 33938391
TCONS_00075401 False 451 lncRNA 0.48 5 33921554 33955861
TCONS_00075001 False 1161 lncRNA 0.42 2 33949649 33955848
TCONS_00075403 True 308 lncRNA 0.48 2 33955353 33955939

Neighbor

gene id symbol gene type direction distance location
XLOC_037984 dre-mir-221 coding downstream 440 33920932 ~ 33921024 (-)
XLOC_037983 dipk2b coding downstream 43950 33863523 ~ 33877514 (-)
XLOC_037982 fundc1 coding downstream 136264 33783549 ~ 33785200 (-)
XLOC_037981 efhc2 coding downstream 139613 33758720 ~ 33781851 (-)
XLOC_037980 ndp coding downstream 171908 33734850 ~ 33749556 (-)
XLOC_037987 NA coding upstream 108570 34064509 ~ 34065606 (-)
XLOC_037988 NA coding upstream 113797 34069736 ~ 34083226 (-)
XLOC_037989 slc35a5 coding upstream 156128 34112067 ~ 34121839 (-)
XLOC_037990 dcaf6 coding upstream 210125 34166064 ~ 34219365 (-)
XLOC_037991 me3 coding upstream 290445 34246384 ~ 34260214 (-)
XLOC_037977 NA non-coding downstream 562420 33356651 ~ 33359044 (-)
XLOC_037975 BX545856.1 non-coding downstream 670458 33247202 ~ 33251006 (-)
XLOC_037974 NA non-coding downstream 718560 33201515 ~ 33202904 (-)
XLOC_037973 NA non-coding downstream 742448 33177648 ~ 33179016 (-)
XLOC_037995 BX294189.1 non-coding upstream 370491 34326430 ~ 34328502 (-)
XLOC_037996 NA non-coding upstream 394578 34350517 ~ 34355550 (-)
XLOC_038000 NA non-coding upstream 590727 34546666 ~ 34587807 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G52503 NA non-coding CI01000009 null 3027695 ~ 3033677 (-)