XLOC_037990 (dcaf6)


Basic Information

Item Value
gene id XLOC_037990
gene name dcaf6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34166064 ~ 34219365 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074547
CCTCTCATTACAGACAACATACTGCGCGTCTCTGCCTTCATTGGCTTTGGGATCGAGATGGATTTGACGTACAAGAGCAGCAGAGGCTAAAGCGGATACTAGCCAAACAAGAAGCACAATATTTTTACTACACCTCAACGCAATCATGCTCCAAGTGTCGGGAACAGATCACCGCGGGGGTGTCGATACGGAGGACTGATATTCTCTCATTCATCCACTATCAGTGGTCGATGAACTTATAGCGACTGTTCGGCGCTTTGTAGGAAAACAATAATAACCAAACGCCGCGGAAGGAAGACAAACACACCAGAAAAAGCGTCTGCTCTCCCCTTTTCATCAATGCATGTCTCAACATTAGACGTTTAAACACCATGTCCTGCTCTGGCAACCTCATTTGGGATGTGAGAAAACGTACCATTGGATGCACAGATCCATACTCGATCAGGACAAATTATTTAGGCAGAAGAGAGTTTGTGCAGCGGCTGAAGCTCGAAGCAGTTCTCAACGTGCACGATGGATGTGTTAACACCATATCCTGGAACGACACTGGAGAGTATATCTTATCAGGTTCAGATGACACTAACTTGGTTATCACAAACCCTTACAACAGAAAGGTCAAAACGACTATTCGTTCAGGACATCGGGCCAACATCTTTAGCGCAAAGTTCATGCCCCACACTAACGATCAACAGATTGTGTCCTGCTCAGGAGATGGCATCattttctacacacacacagagaagagcCAAGAAATCAACAGACAGTGCCAGTTCACCTGCCACTATGGCACTGCTTATGAGATAATGACGGTGCCAAATGACCCCTATACCTTCTTGTCCTGTGGAGAAGATGGTACAGTGAGGTGGTTTGACTTGCGGATGAAGACGAGCTGCACAAAGGAAGACTGTAAAGATGACATTTTGATTAATTGCCGGAGAGCCGCTACCTCAATCTCCATTTGCCCCCTGGTCCCCTACTATCTCGCTGTGGGCTGTTCAGACAGCTCAGTGAGGATCTATGACAGAAGAATGCTGGGAACAAGAGCTACGGgtaACTACATGGGCAGAGGGACAACCGGTATGTGTGTGCGTTTCGTCCCAGCGCACCTGTCCACCAAATCCTGCCGCGTCACCTCTCTGTGTTACAGTGAAGATGGACAAGAAGTGCTGGTCAGTTACTCCTCTGACTACATTTACCTGTTTGACCCCAAAGATGACCAGGCCAGAGAGCTCAAAGGCCCTTCTGAAGAGCGGAGAGAGGAGCTGAGGCAGCCGCCGGTCAAACGCCTGCGTCTGAGAGGAGACTGGTCAGACACGGGGCCCAGAGCCCGACCTGAGAGCGAGAGGGAGCGTGATGGAGAGCAGAGTCCGAATGTTTCACTCATGCAGAGGATGTCGGACATGTTATCTCGATGGTTTGAGGAGGCCAGCGAGGCTCAGAGCAGCAGAGCTCGTCCACAAACTCGACCCAGAGGTACAGCAGCTCAAGCAGAAGGCACGAGCTCAGAGACAACCGCTCAGGCACAGGTGTCCTCTGGCGTGGCAGCTGAAGGAGTGATGGAGCTGGAGACGCCAACCATAAATCCTCTCCCTACACCTCCTGCTCCTGCTCCACCATCAGAGCCTCTCCCGAAGTCGGTCTCCTCATCCTCTTCAGGCTCCTCCTCCACTGTGACAGCTCCTCCCCCTTCGAGCTCCTCGTCCATGGAAAGCGCCACCTCTTCCTCTCTGCTCTCATCTCCAGACACTGAGCAGAAGAGCCAGGGTGAAGTCACGCCCACTCCCTCAGCCACGCCCACTCCCTCAGCCACACCCACTGCATCTAGAGAGGCAGCTTTGTCTGGTGTGAAATCTTCAGGAGAAGCAGCGGTGCGTGTAATCGGTGATCAGAGTACAGGCGTCACTGAAGCTTCTCCAGAGACTACGGAAAGTGTGCCATCCACATCAGCGCCTTCGCTTGGCACCAGCCCTGGCAACATCAGCGTCAGCACTCCTTCGGGATCTGGCCGGTCCGGGACGGCAGAACCTGTGCTTAGTCTGCACTACAGCACTGAGGGCACCACCACTAGCACCATCAAGCTGGACTTCACAGATGAGTGGAGCAGTCCAGCATCTGGTGCTAAAAGCAGCAGTGGAGGACAGAAGTCTGGAGAGTTGGAGGAGAGTCAGAGCAGAGAGGAGCCCCCAGGACACAAGTCAAGCTCATCCTCAAAGAGTGAACCCACACCTGATGGAGGCCAAACTGCAAGCAGCAGCACTGAAAAGCCTGGCATCAGTTCTAAAAACAGCTCTGCTTCAGCGCCTGCTCCACCAGGAGACCCGTCTACCACAGACACAGGTCATCCCTCTGAGGAGCTCCAGACTGCGGCTTCAGAGCAGCTGAGCGAACAGTGCAGGACCAGCGAAAATGCAGGAACGGCCAGTCAGGGTTCGACTCAACCCTCCCGCAATAATCAGGACTCTGATGACAGCGATGACGACCCCATCCTGATCCCATCAGCCAGATTTAGTTACAGAGGATCAGCTGTAGGTGATAGGATGATAAGACGCTCAGCCGCGGCCCGAATCCAGGAGTTGTTCCGCAGGAGGAAAGAAAGACGTGAGATGGAGGAGAGCGAGACTCAGAACATAAGGAGACCCTCCGTCAAGATGATGTACAAGGGTCACCGCAACTCCAGGACCATGATCAAGGAGTCGTGTTTCTGGGGAAGTAATTTTGTGATGAGCGGCTCTGACTGCGGCCACATCTTCATCTGGGATAGACACACAGGGGAGCACCTGATGCTGCTGGAGGCCGACAACCACGTGGTCAACTGCCTACAGCCTCACCCTTATGATCCCATTCTTGCTTCATCGGGAATCGACTATGATATTAAGCTGTGGTCGCCTTTAGAACAGTCACCATCATTTAACAGAGTGCTTGCAGACGAGgTTATTGCTCGTAATGAGTTGATGCTGGAAGAGACGAGGAACACCATCACTGTTCCTGCTTCATTTATGCTCCGAATGCTGGCATCATTAAATCACATCAGAACAgACCGCGTGGAGGGCGATCGTTCAGAAGGCTCAGGACAAGAGAACGAGGACGAGCAGTAGCTCCTGCTAAAAAGTCACCGGTTCTTTTTTTGCTACAATGCACTTGAGCATTTGAGATTTGTACACAAGTTACAAAATAGAGTATTTCCCTATAGGTTCAGTTTTTTGGCATTGTTCTTTTTTAAACGAGACTTTTCTTACTAATTACTCCATGTGAGAGTAAACCGCGTTTGGGGAGTtcatgcaaaaataataaaaaaagcgaTGTGCAAGAAGTCAATATGAGACTTAGACGGCTGGTGCTTGAAGAGAGTATTTAAGTGCAATATT
>TCONS_00074548
CTGAGGCAGCCGCCGGTCAAACGCCTGCGTCTGAGAGGAGACTGGTCAGACACGGGGCCCAGAGCCCGACCTGAGAGCGAGAGGGAGCGTGATGGAGAGCAGAGTCCGAATGTTTCACTCATGCAGAGGATGTCGGACATGTTATCTCGATGGTTTGAGGAGGCCAGCGAGGCTCAGAGCAGCAGAGCTCGTCCACAAACTCGACCCAGAGCTTTGCCTCCAGGTACAGCAGCTCAAGCAGAAGGCACGAGCTCAGAGACAACCGCTCAGGCACAGGTGTCCTCTGGCGTGGCAGCTGAAGGAGTGATGGAGCTGGAGACGCCAACCATAAATCCTCTCCCTACACCTCCTGCTCCTGCTCCACCATCAGAGCCTCTCCCGAAGTCGGTCTCCTCATCCTCTTCAGGCTCCTCCTCCACTGTGACAGCTCCTCCCCCTTCGAGCTCCTCGTCCATGGAAAGCGCCACCTCTTCCTCTCTGCTCTCATCTCCAGACACTGAGCAGAAGAGCCAGGGTGAAGTCACGCCCACTCCCTCAGCCACGCCCACTCCCTCAGCCACACCCACTGCATCTAGAGAGGCAGCTTTGTCTGAATATGGTCCTCACAGGCTGCCGGTAAGTTTAGTGTGTAGACGTTTGCAGAGACTGCTTCTCTTGTCCGATCCCCCTGGACAGGGCAGACGCACAATGCCTAATGTACCCATGACCTCCAGCTCGGAGAGCTCAGCCCAACAGGCTACTGCTGCTGCAGATTCTCCCTCATCTGTGGTAAACAAACAGCTCAGATCCATGACTCTGGAGGAGGAGCAGGGTG

Function

symbol description
dcaf6 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF6 (DDB1 and CUL4 associated factor 6).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-090206-2 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human DCAF6 (DDB1 and CUL4 associated factor 6).

Ensembl:

ensembl_id ENSDARG00000078311

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074547 False 3365 mRNA 0.51 19 34166064 34219365
TCONS_00074548 True 814 mRNA 0.58 5 34184057 34191627

Neighbor

gene id symbol gene type direction distance location
XLOC_037989 slc35a5 coding downstream 44225 34112067 ~ 34121839 (-)
XLOC_037988 NA coding downstream 82838 34069736 ~ 34083226 (-)
XLOC_037987 NA coding downstream 100458 34064509 ~ 34065606 (-)
XLOC_037985 dre-mir-222a coding downstream 210125 33921464 ~ 33955939 (-)
XLOC_037986 NA coding downstream 222928 33942193 ~ 33943136 (-)
XLOC_037991 me3 coding upstream 27019 34246384 ~ 34260214 (-)
XLOC_037992 ildr1b coding upstream 41239 34260604 ~ 34269066 (-)
XLOC_037993 ildr2 coding upstream 55136 34274501 ~ 34300707 (-)
XLOC_037994 gpa33b coding upstream 87775 34307140 ~ 34308113 (-)
XLOC_037995 BX294189.1 coding upstream 107065 34326430 ~ 34328502 (-)
XLOC_037984 dre-mir-221 non-coding downstream 245040 33920932 ~ 33921024 (-)
XLOC_037996 NA non-coding upstream 131152 34350517 ~ 34355550 (-)
XLOC_038000 NA non-coding upstream 327301 34546666 ~ 34587807 (-)
XLOC_038001 NA non-coding upstream 372661 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding upstream 533679 34753044 ~ 34753159 (-)

Expression


Co-expression Network