Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503435 |
| gene name | LOC106581515 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 36255892 ~ 36413741 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein CASP-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0006891 | intra-Golgi vesicle-mediated transport | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030173 | integral component of Golgi membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09313 | CUTL; homeobox protein cut-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962154.1 | False | 4446 | mRNA | 0.58 | 23 | 36255892 | 36386186 |
| XM_036962156.1 | False | 4365 | mRNA | 0.58 | 22 | 36255892 | 36386186 |
| XR_005039430.1 | False | 4808 | mRNA | 0.57 | 24 | 36255892 | 36387517 |
| XR_005039427.1 | False | 4869 | mRNA | 0.57 | 24 | 36255892 | 36387518 |
| XM_036962149.1 | False | 4990 | mRNA | 0.57 | 23 | 36255892 | 36387609 |
| XM_036962151.1 | False | 4987 | mRNA | 0.57 | 23 | 36255892 | 36387609 |
| XM_036962152.1 | False | 4987 | mRNA | 0.57 | 23 | 36255892 | 36387609 |
| XM_036962153.1 | False | 4909 | mRNA | 0.57 | 22 | 36255892 | 36387609 |
| XR_005039428.1 | False | 4960 | mRNA | 0.57 | 24 | 36255892 | 36387609 |
| XR_005039429.1 | False | 4960 | mRNA | 0.57 | 24 | 36255892 | 36387609 |
| XR_005039431.1 | False | 4930 | mRNA | 0.57 | 24 | 36255892 | 36387609 |
| XR_005039432.1 | False | 4830 | mRNA | 0.57 | 24 | 36255892 | 36387609 |
| XM_036962155.1 | True | 2355 | mRNA | 0.53 | 23 | 36255892 | 36413741 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503252 | LOC106581503 | coding | upstream | 37562 | 36180559 ~ 36218330 (+) |
| wdr53 | wdr53 | coding | upstream | 89428 | 36163343 ~ 36166464 (+) |
| LOC110503249 | LOC106613309 | coding | upstream | 105370 | 36145024 ~ 36150522 (+) |
| LOC110503428 | LOC106581496 | coding | upstream | 129672 | 36124822 ~ 36126220 (+) |
| LOC110503248 | LOC106613310 | coding | upstream | 135528 | 36114887 ~ 36120364 (+) |
| LOC110517470 | sh2b2 | coding | downstream | 21217 | 36434958 ~ 36498284 (+) |
| bud23 | wbscr22 | coding | downstream | 92147 | 36505888 ~ 36512484 (+) |
| LOC110503243 | LOC106613311 | coding | downstream | 127722 | 36541463 ~ 36560736 (+) |
| LOC110503266 | LOC106613355 | coding | downstream | 260081 | 36673822 ~ 36749629 (+) |
| LOC110503269 | LOC106613363 | coding | downstream | 514170 | 36927911 ~ 36933490 (+) |
| G1928263 | NA | non-coding | upstream | 3716 | 36248987 ~ 36252176 (+) |
| G1928258 | NA | non-coding | upstream | 13659 | 36241904 ~ 36242233 (+) |
| G1928239 | NA | non-coding | upstream | 33349 | 36222188 ~ 36222543 (+) |
| G1928196 | NA | non-coding | upstream | 43929 | 36209978 ~ 36211963 (+) |
| G1928170 | NA | non-coding | upstream | 86606 | 36166626 ~ 36169329 (+) |
| G1928343 | NA | non-coding | downstream | 33 | 36413774 ~ 36414961 (+) |
| G1928350 | NA | non-coding | downstream | 10678 | 36424419 ~ 36429792 (+) |
| G1928369 | NA | non-coding | downstream | 50253 | 36463994 ~ 36464745 (+) |
| G1928379 | NA | non-coding | downstream | 88802 | 36502543 ~ 36503025 (+) |
| G1928169 | NA | other | upstream | 85421 | 36141229 ~ 36170471 (+) |
| G1927540 | NA | other | upstream | 874023 | 35379902 ~ 35381869 (+) |
| LOC110503217 | LOC106613270 | other | upstream | 1618769 | 34501674 ~ 34638201 (+) |
| G1926351 | NA | other | upstream | 2174157 | 34079223 ~ 34082461 (+) |
| G1928430 | NA | other | downstream | 248133 | 36661874 ~ 36662497 (+) |
| LOC110503264 | LOC106581527 | other | downstream | 644265 | 36985873 ~ 37079320 (+) |
| urb1 | urb1 | other | downstream | 759865 | 37125695 ~ 37191160 (+) |
| LOC110503265 | scaf4 | other | downstream | 788118 | 37193636 ~ 37239498 (+) |
| LOC110503436 | tiam1 | other | downstream | 877921 | 37291589 ~ 37375534 (+) |
