bud23 (wbscr22)


Basic Information

Item Value
gene id bud23
gene name wbscr22
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 36505888 ~ 36512484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961674.1
TTGTGCAAATTATTTTTTCGTATGCTTTAAAATTGTGTTTAGATATGCATTTCATTCAAAATGCCGTTTTGGTTGTTGAAGTAGTTTCTAATAGTATTGTTTTTCCCCAACTACGCGGCTGTCTCTTTAAATTACGTGCCCCTTTCCTTGTCGCTGAAATACCACGTCACACTCACATGTGGAGCCTCAGCTGTAGCCAGACATCATAAAAACGTTTAAGGTTTTTTGGTTTAAATCGATCATTCGTAGATATCTTGTAGTAAACAAAATTAGACATGGCCTCAAGTTGTCGAAGACCCGAGCATATGGCTCCGCCTGAAATTTTCTATAACGAAGAGGAGGCCAAGAAATATTCTCAGAATTCTCGGATGATTGAGATCCAGAGCCAGATGTCTGAGAGAGCTGTGGAGCTGCTGAACCTGCCTGAGGACCAGCCCTGTTTCCTGCTCGATGTAGGGTGTGGCTCCGGGCTAAGTGGGGACTACCTGTCAGAGGAGGGACATTTCTGGGTTGGAGTGGACATCAGCACAGCCATGTTGGATGTAGCGCTGGAtcgggaggtggagggagacctTGTGTTGGGGGATATGGGGGAGGGATTGCCCTTCAGGCCTGGGACCTTTGATGGCTGCATCAGTATTTCTGCTCTCCAGTGGCTCTGCAATGCTGACAAAAAGACTCACAGCCCCCCCAAGAGGCTCTACACCTTCTTCAGTACACTCTACTCCTCCCTGTCAAGAGGAGCCCGTGCAGTGTTTCAGCTTTACCCAGAGAACTCTGAGCAGCTGGAACTGATTACATCCCAGGCCATGAAGGCAGGCTTCAGTGGAGGCATGGTGGTGGACTATCCTAACAGCACCAAGGCCAAAAAGTTCTTCCTGTGTCTGTTCGCTGGGTTTTCAGGAACCCTACCCAAGGGGCTAGTGTCAGAGACAGTGGACAGGGACGTCCCAAATCAAGTCCAATTCACAGGACAGAGATCTCGCTTTAGGAACATGAAGGGCAAGTCTGCAAAGAAGGGAAAAGACTGGGTCctagagaagaaggagaggaggagaagacagggcAGGGAAGTCCGAGCTGACACAAAGTACACTGCCCGACAGAGAAGGCCTCACTTTTAAACCCCAGTCAGTCCTGTGTGTTCCAGCCCGGAGGTTCACACTCATGGAGTACTACTGTCCTTCCTGTGTGACCAGAGGAGCCGTGACCGGCAAGATTTAAACTTAAATGGACTCAAATCAATCCTACTCAAAATGGGTGGAttaaaatctttttttttcttcccatttTAGAAGTTGACAGTTGTTTTCTTCCAGGAGTTGTCTCTCTATCAATGGAATGGAAATAAATTTGAGAATGCGATTCCCACCCACGCCGGTGACTGCCAGTTGCTGTGGTTACCTAGACTGGTTGCTAGGCTTTGTTTAGCTATAACATTCATAGAGAGGGGCTCGTTTCTGTACTTTCCACTCCTTTTGGTGTCATGTGCCACTGGAGCATGAAGAGTGAGGAAAGTTGTAGCTAAACAGTGACTGGCCACCAGTCTAATGCTTATCTGGTTGTGGTCCCTATCCTCTAGACAGAAACTGGCCCCTCTCTAGGACATGGCCCCCTATCCTCTGGACAGAAACTGGCCCCTCTCTAGGACATGGCCCCCTATCCTCTGGACAGAAACTGGCCCCTCTCTAGGACATGACCCCCTATCCTCTGGACAGAAACTGGCCCCTCTATAGGACATGGCCCACTATCCTCTGGACAGAAACTGGCCCCTCTCTAGGACATGGCCCCCTATCCTCTGGACAGAAATAAGAAGTTGTAGATGTGTTCTatatgcactatttctatgcttcctgttcttaagttttaGTTTATGTTTTGTAAAACCAGCTGAAGATGTAATATTTCTGGTTCTTGAAATTAtaatttcacagcggtttagatacAATAATTCAAATCTAATGTCATGtcacatgctgaatacaacagggaaatgcttataagcccttaaccaacaatgcagttttaagtgCTGAAGTATTTACTAAATTAACTGAAGtttaaaaataaaatttaaaaaaaaaatatatatatataataaaaagcaacaataaaataacaataatgagac

Function

NR:

description
probable 18S rRNA (guanine-N(7))-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K19306 BUD23; 18S rRNA (guanine1575-N7)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961674.1 True 2131 mRNA 0.45 12 36505888 36512484

Neighbor

gene id symbol gene type direction distance location
LOC110517470 sh2b2 coding upstream 7604 36434958 ~ 36498284 (+)
LOC110503435 LOC106581515 coding upstream 92147 36255892 ~ 36413741 (+)
LOC110503252 LOC106581503 coding upstream 287558 36180559 ~ 36218330 (+)
wdr53 wdr53 coding upstream 339424 36163343 ~ 36166464 (+)
LOC110503249 LOC106613309 coding upstream 355366 36145024 ~ 36150522 (+)
LOC110503243 LOC106613311 coding downstream 28979 36541463 ~ 36560736 (+)
LOC110503266 LOC106613355 coding downstream 161338 36673822 ~ 36749629 (+)
LOC110503269 LOC106613363 coding downstream 415427 36927911 ~ 36933490 (+)
LOC110503268 LOC106613360 coding downstream 430411 36942895 ~ 36960462 (+)
LOC110503264 LOC106581527 coding downstream 473389 36985873 ~ 37079320 (+)
G1928379 NA non-coding upstream 2863 36502543 ~ 36503025 (+)
G1928369 NA non-coding upstream 41143 36463994 ~ 36464745 (+)
G1928350 NA non-coding upstream 76096 36424419 ~ 36429792 (+)
G1928343 NA non-coding upstream 90927 36413774 ~ 36414961 (+)
G1928381 NA non-coding downstream 9445 36521929 ~ 36522295 (+)
G1928392 NA non-coding downstream 29635 36542119 ~ 36542498 (+)
G1928396 NA non-coding downstream 49733 36562217 ~ 36565350 (+)
G1928398 NA non-coding downstream 58121 36570605 ~ 36571826 (+)
G1928408 NA non-coding downstream 86755 36599239 ~ 36600585 (+)
G1928169 NA other upstream 335417 36141229 ~ 36170471 (+)
G1928170 NA other upstream 336559 36166626 ~ 36169329 (+)
G1927540 NA other upstream 1124019 35379902 ~ 35381869 (+)
LOC110503217 LOC106613270 other upstream 1868765 34501674 ~ 34638201 (+)
G1926351 NA other upstream 2424153 34079223 ~ 34082461 (+)
G1928430 NA other downstream 149390 36661874 ~ 36662497 (+)
urb1 urb1 other downstream 661122 37125695 ~ 37191160 (+)
LOC110503265 scaf4 other downstream 689375 37193636 ~ 37239498 (+)
LOC110503436 tiam1 other downstream 779178 37291589 ~ 37375534 (+)

Expression


Co-expression Network