XLOC_037992 (ildr1b)


Basic Information

Item Value
gene id XLOC_037992
gene name ildr1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34260604 ~ 34269066 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074550
GGAATGGGGGAGGGGGATCAGACAGAGCAAAGGTGTGTTTACACTACGgactcgagagagagagagagagcagaggcAAATAACAAGTTTTCTGGATGTGCTTCCGTCAAATGTTATCGTTGACTTGATGACAAGCGTATTTATAAGTCTATAGTAGTTACGATAGGATTTAGCTGTCTTTGGAAAAACACGGTAAAGGACTAAAAACTACAGTGTAACCGGGAAACATGAAACAAAAACTGCGGCTCAAGGTGCTTGTGCTTCTACTCTGCGTATTTCCAGAAGAGATTTTCTCTATCCAGGTTACTGTTCCtgagacagagagacacacaatGCTGTTTGGTTCTGTCACTCTGCGCTGCGATTATTCCACCTCTGCAAGCCAACAGGATGTTTTGGTCACATGGCGGTACAAGTCCTTCTGTCTGGATCCAGTGCTGGAGTACTACTCCGCTGCTTATCAGGCAGCTCTGAACATGAAGCAGGATCCAGCCAATGACTGTCCAGACAGCAAGCGCACAGTTCGCATAGTGATTCAGAAAAGAGGCATCAATGAACCTGTTCTGGGAACGGAGTACCGACAGCGCAAAATCTCCATTAAAAACAATGCTGATCTGTCCATGAATGAGATCATGTGGTGGGACAATGGCATGTATTTTTGTTCCATTGATGCGCCTGGTGATGTTGTGGGAGACTCCGACAAGGAAATCAGACTCATTGTTTATAACTGGCTAACTGTGCTGCTCATCATCCTCGGGGCTCTACTGTTGATCATCCTGTTCGGGGTCTGCTGCTGTCAGTGCTGTCCTCAGAACTGCTGCTGTTACGTCCGCTGTCCCTGCTGTCCTCGCACCTGCTGCTGCCCTGAAAAAGCGGTCATGCGACACAAGATGATGCGTGAAGCTCAAAAGGCAATGGTACCATGGTTTCACGGCCAGCCCATCTATGCCCCCATTGCCTCAAATGCATCTTCTCAAGCAAATCCTTTACTTTATTCAGGCTCTTTTTCTGAACATTCATCCAAACACAATCTTCCCATGGCCCCTATGGCTATCCCTCCACCTCAACCGGTCCCACAATTCGTACCTTCTCACGGATACCATGCCAATGGCAGCATGAATGGAAATGTACGTGCCAAtaatcagatgttagattttctGGAGAACCAAGTACAAGGGATGGATATGGCCGTCCCAATGCTCCAACCTCAACATCACTACACAGGAGTCCCATTCCAAAACCATCAGCCTCAATACGCAGCCCAGCAACCCCATTACGCGTCACCACCACCTCAATCCATTCCCCAGGCGGTGACTTTTCCAGCTAGGCCGCCCAGCATGCTCTCTGCCCTGGATGAGATGGGGGTCCAAGGTGTGGAACGCAGGGTCATCCAGCTGCCTCCAATTTTAGGCCGACCGAAACAGAGCTCCCGGCGGACCAATGATCAGAGGCCCAGGCAGTCAAGTCAGTCCAGCGGAAGCTCAAACCGCAATGGTGTTCATCGTGATCCTGCATCTTCACGGAGAGGAAACCAGCGCAGCTACAGCGACGAGTCAGACTGGGATGACCGACGGGGAGGTCGAAGTTCATCAGGACGCAGAGGAGAATCAAACAGGTCTCGTCCACGAGTTCGCAGTAAAGCAGAGCTGCTAGAGGAGTTGGAGCATGCAACTAACAATGGAAACAGGAGCTATTCATCTCCTCACAGAGGATCCTGGAGTTCAGACGAAGAGGACAGTTACAGAAAGGGAAGGCGATCTCAAGGGAAACTGTCTGAAAATCCTCCAGCTTACTCTTCCATTGACATTTTGCCTGGCCACAGCAGGAGGGGTGAACAGCTCTCGGACAAGAGCTCTCGCAGTGGCACAAGCGTTGTGATCTAAGTCCTTGACCTGTCCTTCATTTCCAAACTGATCTGTCATTATCCACAACCTACAAGTGAATGCCTTTTGAACTACCGTCATTGGGACTAATAGTGCACTTCAGTTGATTTAATTGATTTCCTGGAAAActgtttgtctttttaaaaacttactcttttttttttaaatatattttttacattggtTTTAGATGTTCTGTGTATTCAATTTAaaagtttttctttgttttatactGCCAGTGTAACTTTTCACTGTTTTTACTgtacattgtttaattattaaccACAGCAAGGTTTTTGGTACTTGATCAGTTTATATAGTAAATGACTAAGAATGAATGCACTTCTGTGAAGGTTAAACATGAGTCTCTTTGGTTCATTTAGTTGTTCTGTTTACTTTTAGTTAGTGTTTggtgtagtttttttgttttgttgtcttcttgtggtgcttttatttgaattaaatccTCGGGAAGATTTATGTTTTTCTGTATGTATGCGTACGCAGCTCTGGGAAGAAAAAAACACTATCAaaagcagcagcaacaacaacaaaaacaacaacaatctacCTATAACTGGCAAATCCAGATAATGTTAACTTTAAAGTggtccttgatttttttttcttctccagagctaaatatattttaatttagctgtattttaaaagaaaagctGTATAATTTCATACtctttaataattgttttaataattgtaCCATCAGTTTCAAAgagaaaatgtgttttgtgtttctAATAAGCTAAAAAAGTGATGTAGAAAGTGGATGGAAACTGTAATAAAGTTACTTTTTACAA

Function

symbol description
ildr1b Acts upstream of or within posterior lateral line neuromast deposition and semicircular canal development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adenohypophyseal placode; adenohypophysis; endoderm; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0048916 posterior lateral line development biological_process
GO:0048922 posterior lateral line neuromast deposition biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-72 Acts upstream of or within posterior lateral line neuromast deposition and semicircular canal development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including adenohypophyseal placode; adenohypophysis; endoderm; otic vesicle; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 42. Orthologous to human ILDR1 (immunoglobulin like domain containing receptor 1).

Ensembl:

ensembl_id ENSDARG00000040910

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074550 True 2701 mRNA 0.44 8 34260604 34269066

Neighbor

gene id symbol gene type direction distance location
XLOC_037991 me3 coding downstream 390 34246384 ~ 34260214 (-)
XLOC_037990 dcaf6 coding downstream 41239 34166064 ~ 34219365 (-)
XLOC_037989 slc35a5 coding downstream 138765 34112067 ~ 34121839 (-)
XLOC_037988 NA coding downstream 177378 34069736 ~ 34083226 (-)
XLOC_037987 NA coding downstream 194998 34064509 ~ 34065606 (-)
XLOC_037993 ildr2 coding upstream 5435 34274501 ~ 34300707 (-)
XLOC_037994 gpa33b coding upstream 38074 34307140 ~ 34308113 (-)
XLOC_037995 BX294189.1 coding upstream 57364 34326430 ~ 34328502 (-)
XLOC_037996 NA coding upstream 81451 34350517 ~ 34355550 (-)
XLOC_037997 cd247l coding upstream 87829 34356895 ~ 34368842 (-)
XLOC_037985 dre-mir-222a non-coding downstream 304665 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding downstream 317468 33942193 ~ 33943136 (-)
XLOC_037984 dre-mir-221 non-coding downstream 339580 33920932 ~ 33921024 (-)
XLOC_038000 NA non-coding upstream 277600 34546666 ~ 34587807 (-)
XLOC_038001 NA non-coding upstream 322960 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding upstream 483978 34753044 ~ 34753159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03235111_03242103 NA coding CI01000009 null 3235014 ~ 3242103 (-)