LOC118944100


Basic Information

Item Value
gene id LOC118944100
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37375591 ~ 37377209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039408.1
tggtctaaagtagtacactatatatagggaatagggttctatagggctctggtctaaagtagtgcactatatagggaatagggttctatagggccctggtctaaagggtgccatttgggaagcatccaTGAGCTTCAAGAAATAATCAgtaagcaatcaatcaatcaatcaatccccACCCATCAATATTACATGTGCATAGATATGCATGGCACAGCTACTTCAAGCTGCTATATCGACTCCTTGTCAGTGTACTTGAATGCCTTGTTGTGTACAGATACACAAGCTGAAGCCCTCCAATGGGAGCAATACTGGAatacagggaggggaggggtctTATTGAATCAACCAATCATACGGAGACATGGAGGGGTCTTATCCAATCATATGGTGATGTGGAGGTCAAACTGTGagagactgactggctggctggctggctcactgTCTGACAGTACAATCATGGACCCTAATCAATACTGTTGCTTGGCATGGTTTGCACATTGGGGCAGATACCAGGTGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCCCATTGGGGCAGATACCAGCGGGTAATATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGGGGCAGATACCAGGGGGTACTATAGGTTCCTGCACATTGTTGTCAAGTGTGCGTATTTGTTTTGAAACGCAGCGTcgtgactataactactgttccaaGAAGGAGGGAAACGAGGTACAACACACTATGGGGAGTCGCTCTTCAGGGTGAAGGATCTAGAATCACGCCTGACAAGGCCAATTTACATCCTCTCCTTGCTGGAAGCCACACCTTCCACAGGTGATAAGCGTGAGGCTCAGATTAATTCCTTCAACTTAATACCGCTCTTTACCGAGCCCAGGAACGGGCGGTGCAGGGCCAAACAGGTGTTGTAcctcgtttccctccttcagagaacagtagttatagtcataacgttaCGTTCCTTTCCAGTCAGTCAACTTCGGTACAACATATAATCCCTCCCCAAGCCAACCCTAACGGATACTAAATGAACCTGACCCCCACCAGATGCGGCAGTCTGGGTGTTACACACACGGTGCGCTGCCTAGTGACTTCCCCTTGTCCCCCGGGTCTCAGCCGTAAGCACACTGTGTGACATCCAAGCGATAAAACCTCACAAGTGTGTGGTGATGCCCAACTATCTCCTATAGTCAACACTTTAAACACCAGCCGACACGTTGCCAGACTCCCGGTGGAGTGGGCACGTACACCGCGCTAGGTAACCCCTTGCTGCTatatgccagagagagagagatcccccaCAATCCAGTGGGAGAGACGCTGCTTAGAGAGCGTCCTGCTGGATTAGCAAAACAGAAAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592164 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039408.1 True 1580 mRNA 0.49 2 37375591 37377209

Neighbor

gene id symbol gene type direction distance location
LOC110503436 tiam1 coding upstream 57 37291589 ~ 37375534 (+)
LOC118944105 NA coding upstream 84177 37244477 ~ 37291414 (+)
LOC110503265 scaf4 coding upstream 136093 37193636 ~ 37239498 (+)
urb1 urb1 coding upstream 184431 37125695 ~ 37191160 (+)
LOC118944028 NA coding upstream 236321 37138638 ~ 37139270 (+)
LOC118944094 NA coding downstream 528 37377737 ~ 37380221 (+)
LOC110503254 LOC106613331 coding downstream 32920 37410129 ~ 37413673 (+)
LOC110503430 LOC106613330 coding downstream 53862 37431071 ~ 37432117 (+)
or112-1 LOC106613329 coding downstream 63617 37440826 ~ 37442646 (+)
LOC110511319 LOC106613336 coding downstream 569454 37946663 ~ 37973546 (+)
G1928705 NA non-coding upstream 50408 37324888 ~ 37325183 (+)
G1928704 NA non-coding upstream 54385 37321007 ~ 37321206 (+)
G1928700 NA non-coding upstream 62919 37310953 ~ 37312672 (+)
G1928645 NA non-coding upstream 186309 37188551 ~ 37189282 (+)
G1928736 NA non-coding downstream 26522 37403731 ~ 37403933 (+)
G1928743 NA non-coding downstream 45337 37422546 ~ 37422884 (+)
G1928745 NA non-coding downstream 48089 37425298 ~ 37425652 (+)
G1928746 NA non-coding downstream 48637 37425846 ~ 37426358 (+)
G1928751 NA non-coding downstream 55707 37432916 ~ 37433394 (+)
LOC110503264 LOC106581527 other upstream 312047 36985873 ~ 37079320 (+)
G1928430 NA other upstream 713094 36661874 ~ 36662497 (+)
G1928752 NA other downstream 57694 37434903 ~ 37435441 (+)
G1928756 NA other downstream 68658 37445561 ~ 37464638 (+)
G1928851 NA other downstream 256006 37633215 ~ 37634159 (+)
LOC110511668 LOC106591056 other downstream 694989 38039863 ~ 38121778 (+)
G1929037 NA other downstream 820689 38197898 ~ 38198524 (+)

Expression


Co-expression Network