LOC118944094


Basic Information

Item Value
gene id LOC118944094
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37377737 ~ 37380221 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039399.1
gggttctagtcaggattctagcagccgtatttagcactaactgaagtttatttagtgctttatccgggtagctggaaagtagagcgttgcagtagtctaacctagaagtgacaaaagcatggatataTTTGTTGAACCTCTTCCATATCTGGTCAACAGCAGTACACTGTCGGAGGTTCCGGGTAAGTCTCTTTTTGAAAAGATGTTGAAAGGGGGCCACACCCATCCAGATCGTTGAAAGGGGGCCACACCCACCCAGAACGTTGAAAAGGGGCCACACCCATCCAGATCGTTGAAAGGGGGCCACACCCATCCAGATCGTTGAAAAGGGGCCACCCATCCAGATCGTTGAAAAGGGGCCACACCCATCCAGATCGTTGAAAGGGGGCCACACCCATCCAGATCGTTGAAAGAGGGCCCACCCATCCAGATCGTTGAAAGAGGGCCCACCCATCCAGATCGTTGAAAGAGGGCCCACCCATCCAGATCGTTGAAAGAGGGCCCACCCATCCAGATCGTTGAAAGAGGGCCCACCCACCCAGATCGTTGAAAGAGGGCCCACCCACCCAGATCGTTGAAAGAGGGCCCACCCACCCAGATCGTTGAAAAGGGGCCCACCCATGCagcatcttttttttttattcaaaccttattttaccaggtaagttgactgagaacacgttctcatttacagcaatgacctggggaatagttacaggcgagaggagggggatgaatgagtcaattggaagctcgggatgattaggtggccatgatggtatgaagggCAGATTGGGAATATAGCCAGGACACTGGTTTAGCTAATTAAGGGTTGGACATGGTTGTTGTCAGTTCTTCTATGAAATCTGGAAACGGGTAGGTGGCACTTGACTGTGGGGCCAGGTACTTCCCACCGAACCTTGATGACTTCTGCCGCGGGGGTTGAACACGGCCACTTCACCTCCAAATGCATAGCCGCCCTGCGGCACAGTTCTGTTACCTCTATTCCCGTAGCACACCAAGTCGTCATCCAAACCTGGGCCCTGTATGTAACCAACCGTCTCACTTATCCCCCTGTATTAATGCTAGTTCCACCTGTTCCGACGACAGTCCCAAGTCTCTCTCCATTTCCTGCACCTCAGTCCCAGCCGGTGTGTCGGCATCTGGGAAGGGAAAGTTGCCATCGGTAACACTAAGCTTCCTCAAGAATTCTACATGTATTTCCAGGGAGTTCGCCCGCAGTACGTGGCGATGGGCACTGAAATGATCTTTCAGAGAGATACTATAACCGTGTGATTGGGGGACAGATTTTAGTTGGCGCAATGTAACGTCTCGCTTTCTAATTTTTTGTTTTAGTAGCCTGAATCGGTCCGGTTCACATCGAGGTGAAAGAGCGGAATAATTGAAGGTATGAATCCGAGCCTCGCGCTTGTCACCTGTGGAAAGTCGGCGCTATTTCATCGGCCCTGTCAGGCGCGATCGTAGATCCTTCAACCGAAGTCGCGAGAGTGCGACTCCCCGTAGTATGTTGAACCGAAGTTGACTGACACAAAGGGAACCTTGTCTGAGAGACAGCTTTTGTACCATAGTATATTATCTGAATCCTTCCACAGATCCAAGGTTTGAGGACAGCCTAGTCAAGTCTTGCAAAGTTTACTAATAGGTGTGTTTTCATTTTTATTCTAGCAACACAGATGCGTTTTTTTTTGGGGAGCAATTTTACTTTCTTCGTTTTGTATATAATTTTGACTTCCTGTTTTGAAAAACCGAAACCAGGCTTGGCTAGCTTTTTAGTCTTACAACTATTTGGTTTGTTCTCTGATGACATAGAAGAGAAGAATGATGTTTTATTTACCCGGTCTTCACTGAGGCTAAGGGAATTGTGTTTTCAAATTAACAAAATCCTGTTTTACTTGAATTGTCATATTATTCATTTGTAATCTTTTTTTCTGTCTTGTTTGTTGTTTGTTGGTCATCCTTTACGGCTCTTCATTCCACCGGTTCTGATTACTACATTATCTTTGTGAATAATAACTATCTCCGTGCACATTTTTGCTGTTAGACAACTTGCACATGCATTCAATAGTCTTTTTTTTTCTGTTAAGAAATTAATTTCTTGCAGTTCTCTGTTTGTTCACCACCGATAATGCACTATCAATAGCCTTGATTTTATTTATTCATCTAGTGAATTGGTGTTGATGATATTTGCCACCacaacagaccccccccccccccccccccctaatcaaGATGGCGAATATGTGTAAACATAAATCCTCCAATCATAGTATTAATAATTATAATACCTGTGAAACAACCCAGTGTGCTACTAAGACTGCATTTTTATTACTCTGTATGTAAATAGTATAATGTGTTTATCATATCAAATAAATTGGTTTCCTACTTGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039399.1 True 2408 mRNA 0.45 2 37377737 37380221

Neighbor

gene id symbol gene type direction distance location
LOC118944100 NA coding upstream 528 37375591 ~ 37377209 (+)
LOC110503436 tiam1 coding upstream 2203 37291589 ~ 37375534 (+)
LOC118944105 NA coding upstream 86323 37244477 ~ 37291414 (+)
LOC110503265 scaf4 coding upstream 138239 37193636 ~ 37239498 (+)
urb1 urb1 coding upstream 186577 37125695 ~ 37191160 (+)
LOC110503254 LOC106613331 coding downstream 29908 37410129 ~ 37413673 (+)
LOC110503430 LOC106613330 coding downstream 50850 37431071 ~ 37432117 (+)
or112-1 LOC106613329 coding downstream 60605 37440826 ~ 37442646 (+)
LOC110511319 LOC106613336 coding downstream 566442 37946663 ~ 37973546 (+)
LOC118944107 NA coding downstream 596424 37976645 ~ 37979130 (+)
G1928705 NA non-coding upstream 52554 37324888 ~ 37325183 (+)
G1928704 NA non-coding upstream 56531 37321007 ~ 37321206 (+)
G1928700 NA non-coding upstream 65065 37310953 ~ 37312672 (+)
G1928645 NA non-coding upstream 188455 37188551 ~ 37189282 (+)
G1928736 NA non-coding downstream 23510 37403731 ~ 37403933 (+)
G1928743 NA non-coding downstream 42325 37422546 ~ 37422884 (+)
G1928745 NA non-coding downstream 45077 37425298 ~ 37425652 (+)
G1928746 NA non-coding downstream 45625 37425846 ~ 37426358 (+)
G1928751 NA non-coding downstream 52695 37432916 ~ 37433394 (+)
LOC110503264 LOC106581527 other upstream 314193 36985873 ~ 37079320 (+)
G1928430 NA other upstream 715240 36661874 ~ 36662497 (+)
G1928752 NA other downstream 54682 37434903 ~ 37435441 (+)
G1928756 NA other downstream 65646 37445561 ~ 37464638 (+)
G1928851 NA other downstream 252994 37633215 ~ 37634159 (+)
LOC110511668 LOC106591056 other downstream 691977 38039863 ~ 38121778 (+)
G1929037 NA other downstream 817677 38197898 ~ 38198524 (+)

Expression


Co-expression Network