LOC110503254 (LOC106613331)


Basic Information

Item Value
gene id LOC110503254
gene name LOC106613331
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37410129 ~ 37413673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581624.2
AACACAGCTATCTACTGTGTTAAGCTCCAATGGTAACACAGCTATCTACTGTGTTAAGCTCCAATGGTAACACAGCTATCTACTGTGTTAAGCTCCAATGGTAACACAGCTATCTACTGTGTTAAGCTCCAATGGTAACACAGCTATCTACTGTGTTAAGCTCCAATGGTATACTATGTAATTGAGTGGATGTGTTGGCTATGAAAACATCAACAAGTGGGTGAACCAATGAACTACTGGACTAGACAATGCCCGCACACAGACAGTCCTCACAGGTCCTCCTTTGTACCCTGATCCTATGAGCCAACCAGGTGAGAGCAGAGTTTCTCTCCCATAACAGACAGTAGTTACCCAACACCCAGCGCTATTGTCTGTCTCATACTTCACCATCAAAGCTGAGAAAAAGAAAGGTCACCTCTCTGCCTCGGATACTACTCCAACCGTACAGgattttcatttgttttaggaCATTGTATGGGGACATGGACTCATCTCCAACTTAGACCATTTCTGAGGTCTGAAAATATCAGAGAAAAGTAGATTTGGTAGTCAACTGTCACTAAGGTTTCTTTGTCAGGAGGACTCTGAGATTTGGGAGTCAACTATCACTACGGTTTCTTTGTCAGGAGGACTCTGAGATTTGGGAGTCAACTATCACTAAAGTTTCTTTGTCAGGAAGACTCTGAGAGTTCGTTTTGACCCTGATTGTTTCTCTGGACCCTTAACAACGGACGACGTGATGTTCCAGGGCGTGTCTGAGATCGCGGCGCTGTGCGCGGGACTGGTGGGTCTGATCGGAGCGGCCGCCGTCACCGGGATGCCCATGTGGAAGGTTACGGCCTTCATCGGAGAGAACATCATCGTCATGGAGACGCGCTGGGAGGGCCTGTGGATGAACTGCTATAGACAGGCCAACATCAGGATGCAGTGTAAAGTGTACgactctctactgtatctccccGCAGACCTGCAGGCTGCCAGGGGCTTGATGTGctgctctctggctctctcaggGATGGGTCTACTGGGGGCTCTAGCAGGGATGCGTTGTACCTCCTGCATCCAGGACAACGACCGCGTTAAGAGCCTCATCCTCATGGTGGCTGGAGGCATGCAGTTACTGGCCTCTATCTGTGTGTTCATCCCAGTCTCCTGGACGGCTCACGCCATAATCCGTGACTTCTATAACCCTTTGCTGATCGACGCCCAGCGCAGGGAGTTGGGAGAGGCTCTCTACATCGGTTGGGTGACCGGAGCCTTCCTACTGACCTCTGGGCTTCTCTTCCTCTGTCGCCGTGTCCACTCCAACAAAGCCTCGTTCGATATCTATCACCCAGCCAACAGGATCAACAAACCCACTCTGATGCACTACCATCCCATCTCCAGCATTCTTAGCGTGAGGGCTCACCGCCAGCCCGGTCTGAACCGCCAACAAAGTCACAGCTTCGATGCATACCAACACCACCAAGCTCCGATTCTTCATAACGTTCCTTATGGACAACAAGGGGTCGTCATGAACCCTCCAGCTGCTGTGTATGACTCCAGCTCGGTGGAGAACGTTGGGCCGTTGGTCTATCACCATGGCAACGGACGTCATGTTGACGGacaccatccctccacctctaacAGCTCCAACTACGTCAGCAGCCTGTCCACTCTGGCTAACTCCCTATACATCAGCCAACAGACTCCGTACTCCTATAACCACCTGACCGCTCCGTATACCACATATACCGGTAGTCAACAGACAAATCCATACTCCTACAGTCATCCGGGAAACCTGTCCGTTTCACACAACTCCAGTTTTCAAGCCGTACCTCAGAATCCTGTTTTTATCGGGTATAAGGGCTCCAGAGTTCAACCATCGCAGTCTCACCACAGTGGAAGCAGTGTTGGTGTGTACATCTGAATAGACTGCAAAGAGACCAGTCATCGTCTGATACTCACTGTACCTTAACAAATAGTGTGAACAAAGAGTGTTCAGTGTATGGGACAGTCATAGCTGTGTAGAGTGTTCAGTGTTTGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTCATAGCTGTGTAGAGTGTTCAGTGTTTGGGACAGTTATAGCTTGTGTAGAGTGTTCAGTGTTTGAGACAATTATAGCTGTGTAGAGTGTTCAGTGTTTGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTTTGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTCATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTCATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTTTGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGGTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTGTTCAGTGTATGGGACAGTTATAGCTGTGTAGAGTCTAGAAACTCTATTCTACATTCTTCTTCTGTAATGTGATTATTCATGTACCATTTGGGTGTGTTTGTCAGGCCGCTGCTGGCGGTTTTACATAGCCAGCTCTCCCTTTTGTCACCTTGACCTTACCTGTCATGTGACCTCAGTAAACAAAAAGTTTGGTTTCTCCAGTAAAGAACATCATGTTTGATTCTGCATACGGGAGAGCCACTTCAAAACGAGGTGATTTTCGTTGGAGCAGGTCAGGAGAGCATTTTTCGCTAACCTTTTTCATAAACTTAAACCtcagtctcctaacctgctgtgtttattctcctaacctgctgtgtttattctcctaacctgctgcgtaggttctcctaacctgctgtgtttattctcctaacctgctgtgtttattctcctaacctgctgtgtttaTTCTCTTAACCTGCTGTGTTTATTCTCCTAACCTTCTGTGtttattctcctaacctgctgcgtaagttctcctaacctgctgcctctgatctggaggattcactaaacagagaacatccctggtcatccctactgcctctgatct

Function

NR:

description
claudin-8-like

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581624.2 True 3205 mRNA 0.47 2 37410129 37413673

Neighbor

gene id symbol gene type direction distance location
LOC118944094 NA coding upstream 29908 37377737 ~ 37380221 (+)
LOC118944100 NA coding upstream 32920 37375591 ~ 37377209 (+)
LOC110503436 tiam1 coding upstream 34595 37291589 ~ 37375534 (+)
LOC118944105 NA coding upstream 118715 37244477 ~ 37291414 (+)
LOC110503265 scaf4 coding upstream 170631 37193636 ~ 37239498 (+)
LOC110503430 LOC106613330 coding downstream 17398 37431071 ~ 37432117 (+)
or112-1 LOC106613329 coding downstream 27153 37440826 ~ 37442646 (+)
LOC110511319 LOC106613336 coding downstream 532990 37946663 ~ 37973546 (+)
LOC118944107 NA coding downstream 562972 37976645 ~ 37979130 (+)
LOC110511668 LOC106591056 coding downstream 626190 38039863 ~ 38121778 (+)
G1928736 NA non-coding upstream 6196 37403731 ~ 37403933 (+)
G1928705 NA non-coding upstream 84946 37324888 ~ 37325183 (+)
G1928704 NA non-coding upstream 88923 37321007 ~ 37321206 (+)
G1928700 NA non-coding upstream 97457 37310953 ~ 37312672 (+)
G1928743 NA non-coding downstream 8873 37422546 ~ 37422884 (+)
G1928745 NA non-coding downstream 11625 37425298 ~ 37425652 (+)
G1928746 NA non-coding downstream 12173 37425846 ~ 37426358 (+)
G1928751 NA non-coding downstream 19243 37432916 ~ 37433394 (+)
G1928753 NA non-coding downstream 24053 37437726 ~ 37437961 (+)
urb1 urb1 other upstream 226607 37125695 ~ 37191160 (+)
LOC110503264 LOC106581527 other upstream 346585 36985873 ~ 37079320 (+)
G1928430 NA other upstream 747632 36661874 ~ 36662497 (+)
G1928752 NA other downstream 21230 37434903 ~ 37435441 (+)
G1928756 NA other downstream 32194 37445561 ~ 37464638 (+)
G1928851 NA other downstream 219542 37633215 ~ 37634159 (+)
G1929037 NA other downstream 784225 38197898 ~ 38198524 (+)

Expression


Co-expression Network