tgfb1a (tgfb1b)


Basic Information

Item Value
gene id tgfb1a
gene name tgfb1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 37873005 ~ 37916016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961610.1
cagagagagacagagacaaagacacacagagagagacagagagagagggagagagagagagagagacagagagagagggagagagagagagagaggggggagagaggaaaaaagagCACTGAAGGAGAAAGGTGTTGAGAAGCAGAACAGACGGACCATGAGACTGGTGTGTTTGGTCCTTACGTGCCTGGCGGCGCTGTGCTTGGCGGGCAGCGTGAGCAGCATGTCCACCTGTAAGACTCTGGACCTGGAGCTGGTTAAGAAGAAACGCATCGAGGCGATCAGGGGACAGATCCTCTCCAAGCTGAGGATGCCCAAGGAGCCGGAGGAGGAGCAGGCGGGAGCAGGGAAGGAGATCCCTGTAGCGttgctctctctctacaacagcaccGTGGAGCTCAGTGAGGAGCAGAAACTACAGCCAcagcccaccacacacacactggatgaagaggaggagtaCTTCGCCAAGGAGGTCCACAAGTTCACCATGAAGCAGGATAAGAATGTCACCAAGCACCAGATGCTGTTTAACCTGAATGAGATGAGGTCCAGCATTGGGGACTACCATCTACTCTCCAGCGCTGAGCTCCGCCTGCTCATCAAAACCACTAACATCCCGTCTGGCAGTGAGCAGCGCCTGGAGCTCTACAAGGGGCTGGGCGACAGCAGACGATACCTGGGATCACGCTTCGTCACCAACAAGTGGAGTGACCGCTGGCTGTCTTTCGACGTCACTGAAACCCTCAAGGAATGGCTGAAGGGGACCGaggaagaGCAGGGCTTTGAGTTGAAGCTGTACTGTGAGTGTGGTAAACCCATGGAAAAGTTCCTCTTCAGTATCTCCGGGTTGGACAGCGGGGTACGAGGTGACGTGGCTGGTCTAGCCAAGAACATGAGGAAGCCTCACATCTTGGCCATGTCCATCCCCCAGAACTACAGCTCACAGCTCACCTCCTCGCGTAAGAAACGGGCCATCGCTACAGACGACACCTGCACAGATAAAACAGAGAACTGTTGCGTGAGGAAACTCTACATCGACTTCAGGAAAGATCTGGGCTGGAAGTGGATCCACCAGCCAAAAGGTTACCATGCCAACTACTGCATGGGCTCATGCACCTACATCTGGAATGCTGAAAACAAATACTCTCAGatccttgCCCTGTACAAGCACCACAACCCAGGAGCGTCGGCCCAGCCGTGCTGTGTACCCCAGGTCTTGGAACCTCTGCCAATCCTCTACTACGTAGGGAGACAACACAAGGTGGAACAGTTGTCCAACATGATTGTGGAGAGCTGTAAGTGCAGCTAGAAGACATCGGTCATATCTCCTCCTATCTCCTCTATCTCCCGTATCTCCTCTTATCTCCTATtatctcctctaatctcctctaatctcctattatctcccccatctcctctatctcctatctcctcctatctcctctatc

Function

symbol description
tgfb1b Predicted to enable cytokine activity; type II transforming growth factor beta receptor binding activity; and type III transforming growth factor beta receptor binding activity. Acts upstream of or within with a positive effect on JNK cascade. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cardiovascular system; head; hematopoietic system; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including Behcet's disease; Camurati-Engelmann disease; aphthous stomatitis; artery disease (multiple); and lung disease (multiple). Orthologous to human TGFB1 (transforming growth factor beta 1).

NR:

description
TGF-beta1B precursor

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K13375 TGFB1; transforming growth factor beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961610.1 True 1451 mRNA 0.53 6 37873005 37916016

Neighbor

gene id symbol gene type direction distance location
LOC110503255 LOC106613338 coding downstream 154733 37679493 ~ 37718272 (-)
LOC118944019 NA coding downstream 180775 37689230 ~ 37692230 (-)
LOC110503256 LOC106613340 coding downstream 193915 37664514 ~ 37679090 (-)
wdr62 LOC106613339 coding downstream 208716 37599847 ~ 37664289 (-)
LOC110503257 LOC106613341 coding downstream 273753 37537087 ~ 37599252 (-)
LOC118944103 LOC106613334 coding upstream 68103 37984081 ~ 38021354 (-)
LOC118944071 leg4 coding upstream 210350 38126366 ~ 38168485 (-)
LOC110503258 LOC105027022 coding upstream 268165 38184181 ~ 38196994 (-)
ryr1b LOC103368738 coding upstream 286724 38202740 ~ 38436340 (-)
hnrnpul1 LOC105027039 coding upstream 615412 38531428 ~ 38570785 (-)
G1930567 NA non-coding downstream 27084 37843085 ~ 37845921 (-)
G1930548 NA non-coding downstream 56028 37816639 ~ 37816977 (-)
G1930545 NA non-coding downstream 134611 37736753 ~ 37738394 (-)
G1930529 NA non-coding downstream 190229 37681732 ~ 37682776 (-)
G1930528 NA non-coding downstream 198288 37672541 ~ 37674717 (-)
G1930601 NA non-coding upstream 30116 37946132 ~ 37946367 (-)
G1930610 NA non-coding upstream 55134 37971150 ~ 37971511 (-)
G1930614 NA non-coding upstream 65706 37981722 ~ 37982264 (-)
G1930615 NA non-coding upstream 66878 37982894 ~ 38072900 (-)
G1930391 LOC103149469 other downstream 568540 37304014 ~ 37304465 (-)
G1930343 NA other downstream 654939 37216638 ~ 37218332 (-)
G1930333 NA other downstream 671082 37201438 ~ 37201923 (-)
G1930026 LOC106613311 other downstream 1315121 36554184 ~ 36557884 (-)
G1927929 NA other downstream 2082420 35789266 ~ 35790585 (-)
G1930684 NA other upstream 201808 38117824 ~ 38118432 (-)
G1930800 NA other upstream 557014 38473030 ~ 38474008 (-)
G1930841 NA other upstream 664401 38580417 ~ 38582296 (-)
G1930859 NA other upstream 736535 38616137 ~ 38656202 (-)

Expression

tgfb1a(tgfb1b) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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tgfb1a(tgfb1b) Expression in each Bioproject

Bar chart with 21 bars.
tgfb1a(tgfb1b) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network