ppp1r13l (ppp1r13l)


Basic Information

Item Value
gene id ppp1r13l
gene name ppp1r13l
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 38590146 ~ 38653011 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961980.1
GCGCAGTGGGCTGGACTCCGCTCCAAAATAAGTTCGCTCATTTCACAACGCAACGACTGGGCGGCTCAACAATAGTCCTAGTTTTAACAGACGTATAGTGAAGGAGTTGTCTAAGTTTAGTTCAGGCTCAACGTTGCTGTCTTAGATTTCAACGGAACTAAGGTCCATCGGGAAGTGGGTTACCACCACCACTCCGCAGCCATGAGTTCCCAGAACAGATACGCTAGCAGCATGTTCCAGACGATGGACGAGGACCTGAATGCGTCTCTGGCCCAGGCTGATGAGTTATCCAGAGAGTTTACCTCTCTGTTGCAGGAGGTCTCCCCCAGCACACAGTCTGTttctcagACTACATCTGATGCTGTGATCCCCAGAGAAAAGCCCCAACCCTCaacctcagagagacagacaggaggaggctccagctctctcccctactcccccagctccatctctaccctcccctactcccccagctccagctctctcccctactcccccagCTCCAGCTCTACCCTCCCCTACTCCCCCAGCTCCAGCTCTAccctcccctactcccccatctccAGCTCTACCCTCCCCTACTCCCCCAGCTCCagctctctcccctactcccccagCTCCAACCTCTCCAACCTGGATTCCATGTTCTCCAGCAGTAAGGTGAAGCCCTCCTCCTACGGTCAGCTGACCCCTCCCAACCAATCGCCTCGTACCCAGCGTCGTGCATCTCCTTCTCCGTCTCGCCGAATGACCTATGACCGCAGCCCGCGAGGATCAATCAGCTATATTGATTCAAACCActcccctccttcccctgttCCTGGCTACGATCAATCACATCGGGGGAGGGTACAACCCTCACACTCCAATCTGCTATCCCCGTATGACTCTGCTACGATGGGTCGGACATCCCCACGACTGGGCCGAAGCCACTCCCCAAGCAAGTTCAGCCAACCAGCAGCACCCAGCACCCTGCCACGGAACTTTGTGCCTTTCAGCCAATCTGatgaaatcaTGCAGAGACCGAAGAACCAAGGTAAATGGAACGAGACCGATCTGGACGTAGCATCTCATAAGAAGAAACCTCACCACTCCTACGACAAGACTGAGTGGCTGAGACCGTTGGTGCCAAACACCAACTGGAGAGAATCTAACCTGGATGGCCCTTCCCCTTCGAAGAAgGACACCCTCCCTCGTTCCCACCAGTCCACCCACTCATCTCTCCCCCGTAACACCCGTATCACTGTTCCTCCCGACTCGTCCTCCCTCTACCACGCCCCTCCCCAACCAATCATATCCCGTATCTCCATccccccctgctcctcctcctcccagccccCACGTCAGCACAGacccatccctctctccgtcATCATGCGGCTCCAGAACCCCTACTGGGCATCGTCTGCCCTCCACCCCCGGGCCCTGGATACCGAGAGGGATATGGGTCTGTACCGCCATGCTGTACCCAGGGAGTATAGGGATTACCTAGAGTACAGAGAGTACCAGACACAGCCACAGACCCAGCCACAGACCCAGCCACTGGCCCAGCCACAGACCCATGAGCTCAGGCAGCCAGCCTACCACGGGGAAGTGCTGAAACCAGGTGATGTTGACATTGAGTTGGAGCGACTGGACCCAATTCATCAAAGTCCCATGGCCCCTGACCCAGCTCTcccagagaaagggagggagacagagagaggaggaggaggagaaccccAGGCGGTGGCCCCTAGGCCCCTCAGCCCGTCCAGGCTGCAACCAGTGGTGGCTGCAGAGAGCCCAGATGTCCCTGACATGGAAGAGCTGCTTCGGATTCGCTCTGAGATCCCCCGGGCCCTGAAGAGACGCGGCTCTGTGACCCCTAACTCCAATCTTGACCCAAACCCTGAACCGGGGTCACAAGCCCCTGTCCAACCCCAGAAGAAGCCAGCCACCCTGCAGCCGGACCACAATCACAAACAGTACAAACAGATCCTGAATAAACTTTTCCGGAGGAAGGGGTTGACGGGCCAGCAAGGGGGGGAGATGGGGAGTGACTACAGCTCCTCCTCAGATGGAGAAGGGGACAGCTCtacatccctctcccctgtcaCTAATCCTGTACCTAACACTGGACCCAACACTGGACCTGCTTTGCCAGAGTACAGGGGGTACAATTCCATCCTGCGTCGGGCCAGTCGGGAACGAGGGGATTCTGGTCAGAGGGCTCGGCTCAGCCCTCTGGTTCTACTGCTGGACGGGTCACTGGTGGGGGAACTGGACACTGTTCAGAGGGCCGTGCAGGAGATGAATGACCCGAGCCAGCCGAACGACGAGGGCATCACagccctccataatgccatctgTGGAGGTCACTACAGCGTGGTGGACTTCCTGGTTCGTATAGGAGCCAACGTCTCCGCCCCAGACAGCCACGGATGGACCCCCCTCCACTGTGCAGCATCCTGTAACGACCTTCCTCTCTGTCAGTTCCTGGTGAGGAACGGAGCAGCCGTCATGGCGGTGACGGAGAGCGACGACGCCACAGCATCTCAGAAGTGCGACCCGTACGCTATGGGCTTCGAGGAGTGTGAGAGCTTCCTCAAGGgtgTGGAGGAGGCGATGGGTGTAGAGAACAGCGGGGTGCTGTATGCCCTGTGGGAGTACCCTGCCCAGGAGGCAGACGAGCTGGGCTTCAGAGAGGGGGACATGGTGACTATCCTCCAGAAGCCTGACGGGGTAGATTGGTGGTGGGCATCACTTTGTGGCCGAGAGGGATTCATACCTAACAACTACTTCGGGCTGTTCCCTAAAGTTCGTCCTAAGTCCCTCTGCTAGACTCCTCTACCCAATCAGCCCTCGCCCCACTGAATGGCTGGAACGGGAACTGGAGCAGAAAACTGTTGTTGAAAACCTGGGAGGAGAAAGCACATTACGCAGTATAACCTTTGTTCCTTTGTCCTGCCTGATTTCACTAAGAAGTGAACTAGAATAACAGGACATGAGTCACTACAGTGAGACATAGGGCAGGTACTGGGCAGGTACTAGACAGGAGTGTCAGTGATGATATTGCTGCATTATACTTCGTCAATGATCTCAATGTGTCACTATCATTTGTGTGTCTGATTTTATTAGTATAtaaaatctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctttctctgtctctctctctttctctgtctctctctctctgtctctttctctgtctctctctgtctc
>XM_036961981.1
GACTCCGCTCCAAAATAAGTTCGCTCATTTCACAACGCAACGACTGGGCGGCTCAACAATAGTCCTAGTTTTAACAGACGTATAGTGAAGGAGTTGTCTAAGTTTAGTTCAGGCTCAACGTTGCTGTCTTAGATTTCAACGGAACTAAGGTCCATCGGGTAAGAAAGCATTTGATTTGGTTTGTCTGGCTATAGAAATGTTTCGCTGCGTGGGATAGTCTACTCTGCCCAGTTTACTGCAGGAGGAAGTGGGTTACCACCACCACTCCGCAGCCATGAGTTCCCAGAACAGATACGCTAGCAGCATGTTCCAGACGATGGACGAGGACCTGAATGCGTCTCTGGCCCAGGCTGATGAGTTATCCAGAGAGTTTACCTCTCTGTTGCAGGAGGTCTCCCCCAGCACACAGTCTGTttctcagACTACATCTGATGCTGTGATCCCCAGAGAAAAGCCCCAACCCTCaacctcagagagacagacaggaggaggctccagctctctcccctactcccccagctccatctctaccctcccctactcccccagctccagctctctcccctactcccccagCTCCAGCTCTACCCTCCCCTACTCCCCCAGCTCCAGCTCTAccctcccctactcccccatctccAGCTCTACCCTCCCCTACTCCCCCAGCTCCagctctctcccctactcccccagCTCCAACCTCTCCAACCTGGATTCCATGTTCTCCAGCAGTAAGGTGAAGCCCTCCTCCTACGGTCAGCTGACCCCTCCCAACCAATCGCCTCGTACCCAGCGTCGTGCATCTCCTTCTCCGTCTCGCCGAATGACCTATGACCGCAGCCCGCGAGGATCAATCAGCTATATTGATTCAAACCActcccctccttcccctgttCCTGGCTACGATCAATCACATCGGGGGAGGGTACAACCCTCACACTCCAATCTGCTATCCCCGTATGACTCTGCTACGATGGGTCGGACATCCCCACGACTGGGCCGAAGCCACTCCCCAAGCAAGTTCAGCCAACCAGCAGCACCCAGCACCCTGCCACGGAACTTTGTGCCTTTCAGCCAATCTGatgaaatcaTGCAGAGACCGAAGAACCAAGGTAAATGGAACGAGACCGATCTGGACGTAGCATCTCATAAGAAGAAACCTCACCACTCCTACGACAAGACTGAGTGGCTGAGACCGTTGGTGCCAAACACCAACTGGAGAGAATCTAACCTGGATGGCCCTTCCCCTTCGAAGAAgGACACCCTCCCTCGTTCCCACCAGTCCACCCACTCATCTCTCCCCCGTAACACCCGTATCACTGTTCCTCCCGACTCGTCCTCCCTCTACCACGCCCCTCCCCAACCAATCATATCCCGTATCTCCATccccccctgctcctcctcctcccagccccCACGTCAGCACAGacccatccctctctccgtcATCATGCGGCTCCAGAACCCCTACTGGGCATCGTCTGCCCTCCACCCCCGGGCCCTGGATACCGAGAGGGATATGGGTCTGTACCGCCATGCTGTACCCAGGGAGTATAGGGATTACCTAGAGTACAGAGAGTACCAGACACAGCCACAGACCCAGCCACAGACCCAGCCACTGGCCCAGCCACAGACCCATGAGCTCAGGCAGCCAGCCTACCACGGGGAAGTGCTGAAACCAGGTGATGTTGACATTGAGTTGGAGCGACTGGACCCAATTCATCAAAGTCCCATGGCCCCTGACCCAGCTCTcccagagaaagggagggagacagagagaggaggaggaggagaaccccAGGCGGTGGCCCCTAGGCCCCTCAGCCCGTCCAGGCTGCAACCAGTGGTGGCTGCAGAGAGCCCAGATGTCCCTGACATGGAAGAGCTGCTTCGGATTCGCTCTGAGATCCCCCGGGCCCTGAAGAGACGCGGCTCTGTGACCCCTAACTCCAATCTTGACCCAAACCCTGAACCGGGGTCACAAGCCCCTGTCCAACCCCAGAAGAAGCCAGCCACCCTGCAGCCGGACCACAATCACAAACAGTACAAACAGATCCTGAATAAACTTTTCCGGAGGAAGGGGTTGACGGGCCAGCAAGGGGGGGAGATGGGGAGTGACTACAGCTCCTCCTCAGATGGAGAAGGGGACAGCTCtacatccctctcccctgtcaCTAATCCTGTACCTAACACTGGACCCAACACTGGACCTGCTTTGCCAGAGTACAGGGGGTACAATTCCATCCTGCGTCGGGCCAGTCGGGAACGAGGGGATTCTGGTCAGAGGGCTCGGCTCAGCCCTCTGGTTCTACTGCTGGACGGGTCACTGGTGGGGGAACTGGACACTGTTCAGAGGGCCGTGCAGGAGATGAATGACCCGAGCCAGCCGAACGACGAGGGCATCACagccctccataatgccatctgTGGAGGTCACTACAGCGTGGTGGACTTCCTGGTTCGTATAGGAGCCAACGTCTCCGCCCCAGACAGCCACGGATGGACCCCCCTCCACTGTGCAGCATCCTGTAACGACCTTCCTCTCTGTCAGTTCCTGGTGAGGAACGGAGCAGCCGTCATGGCGGTGACGGAGAGCGACGACGCCACAGCATCTCAGAAGTGCGACCCGTACGCTATGGGCTTCGAGGAGTGTGAGAGCTTCCTCAAGGgtgTGGAGGAGGCGATGGGTGTAGAGAACAGCGGGGTGCTGTATGCCCTGTGGGAGTACCCTGCCCAGGAGGCAGACGAGCTGGGCTTCAGAGAGGGGGACATGGTGACTATCCTCCAGAAGCCTGACGGGGTAGATTGGTGGTGGGCATCACTTTGTGGCCGAGAGGGATTCATACCTAACAACTACTTCGGGCTGTTCCCTAAAGTTCGTCCTAAGTCCCTCTGCTAGACTCCTCTACCCAATCAGCCCTCGCCCCACTGAATGGCTGGAACGGGAACTGGAGCAGAAAACTGTTGTTGAAAACCTGGGAGGAGAAAGCACATTACGCAGTATAACCTTTGTTCCTTTGTCCTGCCTGATTTCACTAAGAAGTGAACTAGAATAACAGGACATGAGTCACTACAGTGAGACATAGGGCAGGTACTGGGCAGGTACTAGACAGGAGTGTCAGTGATGATATTGCTGCATTATACTTCGTCAATGATCTCAATGTGTCACTATCATTTGTGTGTCTGATTTTATTAGTATAtaaaatctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctttctctgtctctctctctttctctgtctctctctctctgtctctttctctgtctctctctgtctc
>XM_036961984.1
GACTCCGCTCCAAAATAAGTTCGCTCATTTCACAACGCAACGACTGGGCGGCTCAACAATAGTCCTAGTTTTAACAGACGTATAGTGAAGGAGTTGTCTAAGTTTAGTTCAGGCTCAACGTTGCTGTCTTAGATTTCAACGGAACTAAGGTCCATCGGgaagcaacgagggggaaagagaagaggtaGTGAAACACGAAGAGAGGAAAAgctgagagacagaggtagagagagtggtgTTAAGAAGTGGGTTACCACCACCACTCCGCAGCCATGAGTTCCCAGAACAGATACGCTAGCAGCATGTTCCAGACGATGGACGAGGACCTGAATGCGTCTCTGGCCCAGGCTGATGAGTTATCCAGAGAGTTTACCTCTCTGTTGCAGGAGGTCTCCCCCAGCACACAGTCTGTttctcagACTACATCTGATGCTGTGATCCCCAGAGAAAAGCCCCAACCCTCaacctcagagagacagacaggaggaggctccagctctctcccctactcccccagctccatctctaccctcccctactcccccagctccagctctctcccctactcccccagCTCCAGCTCTACCCTCCCCTACTCCCCCAGCTCCAGCTCTAccctcccctactcccccatctccAGCTCTACCCTCCCCTACTCCCCCAGCTCCagctctctcccctactcccccagCTCCAACCTCTCCAACCTGGATTCCATGTTCTCCAGCAGTAAGGTGAAGCCCTCCTCCTACGGTCAGCTGACCCCTCCCAACCAATCGCCTCGTACCCAGCGTCGTGCATCTCCTTCTCCGTCTCGCCGAATGACCTATGACCGCAGCCCGCGAGGATCAATCAGCTATATTGATTCAAACCActcccctccttcccctgttCCTGGCTACGATCAATCACATCGGGGGAGGGTACAACCCTCACACTCCAATCTGCTATCCCCGTATGACTCTGCTACGATGGGTCGGACATCCCCACGACTGGGCCGAAGCCACTCCCCAAGCAAGTTCAGCCAACCAGCAGCACCCAGCACCCTGCCACGGAACTTTGTGCCTTTCAGCCAATCTGatgaaatcaTGCAGAGACCGAAGAACCAAGGTAAATGGAACGAGACCGATCTGGACGTAGCATCTCATAAGAAGAAACCTCACCACTCCTACGACAAGACTGAGTGGCTGAGACCGTTGGTGCCAAACACCAACTGGAGAGAATCTAACCTGGATGGCCCTTCCCCTTCGAAGAAgGACACCCTCCCTCGTTCCCACCAGTCCACCCACTCATCTCTCCCCCGTAACACCCGTATCACTGTTCCTCCCGACTCGTCCTCCCTCTACCACGCCCCTCCCCAACCAATCATATCCCGTATCTCCATccccccctgctcctcctcctcccagccccCACGTCAGCACAGacccatccctctctccgtcATCATGCGGCTCCAGAACCCCTACTGGGCATCGTCTGCCCTCCACCCCCGGGCCCTGGATACCGAGAGGGATATGGGTCTGTACCGCCATGCTGTACCCAGGGAGTATAGGGATTACCTAGAGTACAGAGAGTACCAGACACAGCCACAGACCCAGCCACAGACCCAGCCACTGGCCCAGCCACAGACCCATGAGCTCAGGCAGCCAGCCTACCACGGGGAAGTGCTGAAACCAGGTGATGTTGACATTGAGTTGGAGCGACTGGACCCAATTCATCAAAGTCCCATGGCCCCTGACCCAGCTCTcccagagaaagggagggagacagagagaggaggaggaggagaaccccAGGCGGTGGCCCCTAGGCCCCTCAGCCCGTCCAGGCTGCAACCAGTGGTGGCTGCAGAGAGCCCAGATGTCCCTGACATGGAAGAGCTGCTTCGGATTCGCTCTGAGATCCCCCGGGCCCTGAAGAGACGCGGCTCTGTGACCCCTAACTCCAATCTTGACCCAAACCCTGAACCGGGGTCACAAGCCCCTGTCCAACCCCAGAAGAAGCCAGCCACCCTGCAGCCGGACCACAATCACAAACAGTACAAACAGATCCTGAATAAACTTTTCCGGAGGAAGGGGTTGACGGGCCAGCAAGGGGGGGAGATGGGGAGTGACTACAGCTCCTCCTCAGATGGAGAAGGGGACAGCTCtacatccctctcccctgtcaCTAATCCTGTACCTAACACTGGACCCAACACTGGACCTGCTTTGCCAGAGTACAGGGGGTACAATTCCATCCTGCGTCGGGCCAGTCGGGAACGAGGGGATTCTGGTCAGAGGGCTCGGCTCAGCCCTCTGGTTCTACTGCTGGACGGGTCACTGGTGGGGGAACTGGACACTGTTCAGAGGGCCGTGCAGGAGATGAATGACCCGAGCCAGCCGAACGACGAGGGCATCACagccctccataatgccatctgTGGAGGTCACTACAGCGTGGTGGACTTCCTGGTTCGTATAGGAGCCAACGTCTCCGCCCCAGACAGCCACGGATGGACCCCCCTCCACTGTGCAGCATCCTGTAACGACCTTCCTCTCTGTCAGTTCCTGGTGAGGAACGGAGCAGCCGTCATGGCGGTGACGGAGAGCGACGACGCCACAGCATCTCAGAAGTGCGACCCGTACGCTATGGGCTTCGAGGAGTGTGAGAGCTTCCTCAAGGgtgTGGAGGAGGCGATGGGTGTAGAGAACAGCGGGGTGCTGTATGCCCTGTGGGAGTACCCTGCCCAGGAGGCAGACGAGCTGGGCTTCAGAGAGGGGGACATGGTGACTATCCTCCAGAAGCCTGACGGGGTAGATTGGTGGTGGGCATCACTTTGTGGCCGAGAGGGATTCATACCTAACAACTACTTCGGGCTGTTCCCTAAAGTTCGTCCTAAGTCCCTCTGCTAGACTCCTCTACCCAATCAGCCCTCGCCCCACTGAATGGCTGGAACGGGAACTGGAGCAGAAAACTGTTGTTGAAAACCTGGGAGGAGAAAGCACATTACGCAGTATAACCTTTGTTCCTTTGTCCTGCCTGATTTCACTAAGAAGTGAACTAGAATAACAGGACATGAGTCACTACAGTGAGACATAGGGCAGGTACTGGGCAGGTACTAGACAGGAGTGTCAGTGATGATATTGCTGCATTATACTTCGTCAATGATCTCAATGTGTCACTATCATTTGTGTGTCTGATTTTATTAGTATAtaaaatctctctctgtctctctctctctgtctctctctctctctgtctctctctctgtctctttctctgtctctctctctttctctgtctctctctctctgtctctttctctgtctctctctgtctc
>TU2206306
GCTCATTTCACAACGCAACGACTGGGCGGCTCAACAATAGTCCTAGTTTTAACAGACGTATAGTGAAGGAGTTGTCTAAGTTTAGTTCAGGCTCAACGTTGCTGTCTTAGATTTCAACGGAACTAAGGTCCATCGGGAAGTGGGTTACCACCACCACTCCGCAGCCATGAGTTCCCAGAACAGATACGCTAGCAGCATGTTCCAGACGATGGACGAGGACCTGAATGCGTCTCTGGCCCAGGCTGATGAGTTATCCAGAGAGTTTACCTCTCTGTTGCAGGAGGTCTCCCCCAGCACACAGTCTGTttctcagACTACATCTGATGCTGTGATCCCCAGAGAAAAGCCCCAACCCTCaacctcagagagacagacaggaggaggctccagctctctcccctactcccccagctccatctctaccctcccctactcccccagctccagctctctcccctactcccccagCTCCAGCTCTA

Function

symbol description
ppp1r13l Predicted to be involved in positive regulation of cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within apoptotic process and transcription, DNA-templated. Orthologous to human PPP1R13L (protein phosphatase 1 regulatory subunit 13 like).

NR:

description
relA-associated inhibitor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961980.1 False 3254 mRNA 0.56 14 38590146 38653011
XM_036961981.1 False 3327 mRNA 0.56 14 38590159 38653011
XM_036961984.1 False 3325 mRNA 0.56 15 38590159 38653011
TU2206306 True 479 TUCP 0.54 4 38590181 38635392

Neighbor

gene id symbol gene type direction distance location
LOC110503272 NA coding upstream 62379 38526884 ~ 38527767 (+)
rasgrp4 rasgrp4 coding upstream 66980 38463435 ~ 38523166 (+)
LOC110511668 LOC106591056 coding upstream 468368 38039863 ~ 38121778 (+)
LOC118944107 NA coding upstream 611016 37976645 ~ 37979130 (+)
LOC110511319 LOC106613336 coding upstream 616600 37946663 ~ 37973546 (+)
LOC118944104 NA coding downstream 67771 38711025 ~ 38736584 (+)
tmem91 tmem91 coding downstream 84458 38737469 ~ 38757769 (+)
bckdha bckdha coding downstream 117829 38770840 ~ 38793470 (+)
bicra LOC106613370 coding downstream 192471 38845482 ~ 38932575 (+)
ehd2b LOC106613377 coding downstream 290413 38943424 ~ 38977744 (+)
G1929213 NA non-coding upstream 14780 38573794 ~ 38575366 (+)
G1929174 NA non-coding upstream 19411 38569877 ~ 38570735 (+)
G1929177 NA non-coding upstream 24218 38564807 ~ 38565928 (+)
G1929200 NA non-coding upstream 43345 38545676 ~ 38546801 (+)
G1929175 NA non-coding upstream 65668 38523951 ~ 38524478 (+)
G1929286 NA non-coding downstream 28793 38681804 ~ 38692641 (+)
G1929284 NA non-coding downstream 29212 38682223 ~ 38689024 (+)
G1929299 NA non-coding downstream 69136 38722147 ~ 38722615 (+)
G1929291 NA non-coding downstream 109380 38762391 ~ 38763052 (+)
G1929196 NA other upstream 77041 38509846 ~ 38513105 (+)
G1929037 NA other upstream 391622 38197898 ~ 38198524 (+)
G1928851 NA other upstream 955987 37633215 ~ 37634159 (+)
G1928756 NA other upstream 1125508 37445561 ~ 37464638 (+)
spred3 spred3 other downstream 367822 39020800 ~ 39049676 (+)
G1929664 NA other downstream 894801 39547812 ~ 39549780 (+)
G1929808 NA other downstream 1221267 39874278 ~ 39877275 (+)
G1929816 NA other downstream 1235316 39888327 ~ 39889155 (+)
G1929269 NA non-coding downstream 8589 38643981 ~ 38645671 (+)

Expression


Co-expression Network