XLOC_037996


Basic Information

Item Value
gene id XLOC_037996
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34350517 ~ 34355550 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075408
tCTTAGAATATTAAAACACTTGGAAAATGGTTTAATGATGTTTACAACAAAAGAGAACTGTACAGTTACAGTAAAAgattatctttatatatatatttataaaaaaacaaacaaaatacagcaGACAAATGCATCAAATCTACCATGTATCCTGATTCACATACTCATATTCTACACAATCATTCAGTTCTAAGCTACAGCGACGTAGCCGTTTAGCGTTCAGtcttggagtgtgtgtgtttgcttgatTTTACAGGCCACTAGAGTTCAGATCTGTAGTGATACTGAGAAACCAACCAGTCGTCACTATTACAACAGTGAGAGTTACAGCGTTCTGAAGGGAGAAGTACAATCTATAGTATGTGACCGGGTGAAAAATGGAGCACATTCCTTGAGCTTCAGCCGTAGGAAAGATGGAAAAACTAAAAGTTGAACGTCATCCACCTCACTCCTTCACAAACAGGTGGCCATACCAAAAGTACATCCCGTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075408 True 491 lncRNA 0.37 2 34350517 34355550

Neighbor

gene id symbol gene type direction distance location
XLOC_037995 BX294189.1 coding downstream 22015 34326430 ~ 34328502 (-)
XLOC_037994 gpa33b coding downstream 42404 34307140 ~ 34308113 (-)
XLOC_037993 ildr2 coding downstream 49810 34274501 ~ 34300707 (-)
XLOC_037992 ildr1b coding downstream 81451 34260604 ~ 34269066 (-)
XLOC_037991 me3 coding downstream 90303 34246384 ~ 34260214 (-)
XLOC_037997 cd247l coding upstream 1345 34356895 ~ 34368842 (-)
XLOC_037998 grtp1b coding upstream 34426 34389976 ~ 34396264 (-)
XLOC_037999 ppp2r3b coding upstream 128904 34484454 ~ 34509997 (-)
XLOC_038000 NA coding upstream 191116 34546666 ~ 34587807 (-)
XLOC_038001 NA coding upstream 236476 34592026 ~ 34812883 (-)
XLOC_037988 NA non-coding downstream 267291 34069736 ~ 34083226 (-)
XLOC_037987 NA non-coding downstream 284911 34064509 ~ 34065606 (-)
XLOC_037985 dre-mir-222a non-coding downstream 394578 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding downstream 407381 33942193 ~ 33943136 (-)
XLOC_038002 BX601644.5 non-coding upstream 397494 34753044 ~ 34753159 (-)
XLOC_038004 BX601644.3 non-coding upstream 493310 34848860 ~ 34851804 (-)
XLOC_038016 NA non-coding upstream 1325418 35680968 ~ 35832754 (-)

Expression

Expression of XLOC_037996 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G83706 NA non-coding CI01000013 null 8684886 ~ 8685095 (-)
grasscarp (Ctenopharyngodon idella) G204402 NA non-coding CI01000048 null 270974 ~ 271195 (+)
striped catfish (Pangasianodon hypophthalmus) cd247l NA misc NC_047599.1 CM018545.1 10508140 ~ 10570221 (+)
bowfin (Amia calva) G70063 NA non-coding CM030128.1 CM030128.1 13694757 ~ 13696971 (-)