Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503405 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 39396023 ~ 39629211 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: cGMP-dependent 3',5'-cyclic phosphodiesterase isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004114 | 3',5'-cyclic-nucleotide phosphodiesterase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036962131.1 | False | 3878 | mRNA | 0.51 | 30 | 39396023 | 39629211 |
| XM_036962133.1 | False | 3775 | mRNA | 0.51 | 30 | 39440733 | 39629211 |
| XM_036962132.1 | False | 3802 | mRNA | 0.51 | 30 | 39459657 | 39629211 |
| XM_036962134.1 | True | 3716 | mRNA | 0.51 | 30 | 39460218 | 39629211 |
39,320,000
39,360,000
39,400,000
39,440,000
39,480,000
39,520,000
39,560,000
39,560,000
39,600,000
39,640,000
39,680,000
39,720,000
39,760,000
39,800,000
NC_048588.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110516717 | LOC106581405 | coding | upstream | 45642 | 39238180 ~ 39350381 (+) |
| LOC110503192 | LOC106613220 | coding | upstream | 160984 | 39207177 ~ 39235039 (+) |
| LOC110503486 | LOC106613381 | coding | upstream | 299311 | 39091519 ~ 39096712 (+) |
| LOC118944042 | LOC106590898 | coding | upstream | 304790 | 39087111 ~ 39091233 (+) |
| spred3 | spred3 | coding | upstream | 346347 | 39020800 ~ 39049676 (+) |
| LOC110503201 | NA | coding | downstream | 1452 | 39630663 ~ 39632379 (+) |
| trnat-agu-148 | NA | coding | downstream | 135448 | 39764659 ~ 39764732 (+) |
| LOC110503199 | LOC106613203 | coding | downstream | 171526 | 39800737 ~ 39809748 (+) |
| LOC110503406 | LOC106581179 | coding | downstream | 814559 | 40443770 ~ 40535727 (+) |
| LOC110503211 | LOC106613213 | coding | downstream | 1180967 | 40810178 ~ 40837501 (+) |
| G1929564 | NA | non-coding | upstream | 5467 | 39389334 ~ 39390556 (+) |
| G1929562 | NA | non-coding | upstream | 7886 | 39384958 ~ 39388137 (+) |
| G1929530 | NA | non-coding | upstream | 84049 | 39311512 ~ 39311974 (+) |
| G1929526 | NA | non-coding | upstream | 104688 | 39287698 ~ 39291335 (+) |
| G1929495 | NA | non-coding | upstream | 191893 | 39203865 ~ 39204130 (+) |
| G1929697 | NA | non-coding | downstream | 5336 | 39634547 ~ 39634764 (+) |
| G1929698 | NA | non-coding | downstream | 7555 | 39636766 ~ 39637334 (+) |
| G1929705 | NA | non-coding | downstream | 36927 | 39666138 ~ 39669170 (+) |
| G1929706 | NA | non-coding | downstream | 40396 | 39669607 ~ 39670592 (+) |
| bicra | LOC106613370 | other | upstream | 463474 | 38845482 ~ 38932575 (+) |
| ppp1r13l | ppp1r13l | other | upstream | 760631 | 38590146 ~ 38653011 (+) |
| G1929196 | NA | other | upstream | 882918 | 38509846 ~ 38513105 (+) |
| G1929037 | NA | other | upstream | 1197499 | 38197898 ~ 38198524 (+) |
| G1929808 | NA | other | downstream | 245067 | 39874278 ~ 39877275 (+) |
| G1929816 | NA | other | downstream | 259116 | 39888327 ~ 39889155 (+) |
| G1929891 | NA | other | downstream | 396724 | 40025935 ~ 40028517 (+) |
| G1929901 | NA | other | downstream | 420153 | 40049364 ~ 40082173 (+) |
| G1929909 | NA | other | downstream | 447265 | 40076476 ~ 40078332 (+) |
