XLOC_037998 (grtp1b)


Basic Information

Item Value
gene id XLOC_037998
gene name grtp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34389976 ~ 34396264 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074558
GGGAGGAGTTTACACAAAACAGCTACTCAGATACTGTCCGTTGGAAGAGACGCATATCTAACTCTACATGGAGAGTCACTCTGAACAAAGCACGGAATGTCCTGCTACTTCAGACAACAGCGACTGTCAGAGGGTTGACCAATATGGATTTGAGAAATCCGATTTCAACTACGAATCCTATGAGGAGCTGATGTCTGACTATTTAGCTGTTGTCACTAGAAGGTCCAAAAAGTGGTCAAAGCTTTTGCAGGGCACTGGAAAAATGGAGAAGAATCTGAAAGTGAAGCGATATGTGAGGAAAGGGATTCCATGTGAACATCGCACCGAAATCTGGATGGCATTCAGTGGAGCCCAAGACCAGTTGGAGAGGAATCCTGGCTACTATCAGGCTCTATTAAAGACAGAGCAGCACGACCCTAAAATAGAAGAGGTCATACATGCTGATATGCACAGAACCTTTCCTGACAACATTCAGTTTCGTCACTCCTCCCAGTCATGTTTACAGAAAGCCTTGTTTAATGTACTTCTGGCTTACGGACACCACAATAAGGATGTTGGTTACTGTCAGGGAATGAACTTTATTGCTGGTTACCTCCTCATCATTACCAAAGATGAAGAGAAGTCATTTTGGTTAATGGATGCTTTAATCGGCAGGATCTTACCAGATTATTACACACAAACAATGTTGGGGCTTAAAGTGGATCAAGAAGTGCTTGGTGAGCTTGTCAAAAGCAAGGTTCCTGCTGTTTGGCAGACCATGAATCAGCATGACGTAATGTGGACCCTGGTGGTCTCACGCTGGTTCATCTGCCTATATGTTGACGTCCTTCCTGTAGAGACGGTGCTAAGAATATGGGACTGTCTTTTCTATGAGGGATCCAAGATTCTGTTCCGTGTGGCTTTGACTCTAATTCGACACAATCAGAACCTCATCTCACAGGCAAAGAGTCTCCCAGAAATCTGCGAAGGCTTTAAACAGATCACACGTGGAGAGTATGTAGAGGACTGCCACTCATTCATGCAGAAAATCTTTATGGAGCCAGGAGGTCTCTCTACAGCAACAATCACTAAACTCAGGAAGATGTGTAGAAATAACATTACTTCTGAGAGCCAATAACAGTCCTTCGCAACTGAATGGTGAACATAGACGGTTCTAACTACACGCAAGATAGGAGTCTGTTATTCTGTTATATCTGGACAAAAAGTAATTGCCTGGTAATGCTTTACATGAATCCTTTAAAAATATGCTACCAGTGAAAAGTTTGGGGATGGTAAgacttatttttttatcttttgaatGAAGTCTAATGCTCACTAAGAATTGTATAACTAACAagattattattacattatctaAAACAGtttatattctattttaaaaAGGTGAATTTTCAGCAGTTATTTCTTTGGATATTTCAGAAATGTCTTATTTTTggcaaaaacaaatgtttcaaaatCTTTATGCCggtattttggaaaaaaaaatatatatctcaaAGATATTTTGAGAGGAATTTTAagcacaataaataatttttgctgTTCTATTTTATTCATATGTTACAGATAATAAGCTGATATCTATGGAAGGCCAATTCtgacactgaaaaataaaaaataaaaaaaattattgtgactTTAA

Function

symbol description
grtp1b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0090630 activation of GTPase activity biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-346 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human GRTP1 (growth hormone regulated TBC protein 1).

Ensembl:

ensembl_id ENSDARG00000030269

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074558 True 1642 mRNA 0.39 8 34389976 34396264

Neighbor

gene id symbol gene type direction distance location
XLOC_037997 cd247l coding downstream 21134 34356895 ~ 34368842 (-)
XLOC_037996 NA coding downstream 34426 34350517 ~ 34355550 (-)
XLOC_037995 BX294189.1 coding downstream 61474 34326430 ~ 34328502 (-)
XLOC_037994 gpa33b coding downstream 81863 34307140 ~ 34308113 (-)
XLOC_037993 ildr2 coding downstream 89269 34274501 ~ 34300707 (-)
XLOC_037999 ppp2r3b coding upstream 88190 34484454 ~ 34509997 (-)
XLOC_038000 NA coding upstream 150402 34546666 ~ 34587807 (-)
XLOC_038001 NA coding upstream 195762 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 coding upstream 356780 34753044 ~ 34753159 (-)
XLOC_038003 BX601644.2 coding upstream 439804 34836068 ~ 34842414 (-)
XLOC_037988 NA non-coding downstream 306750 34069736 ~ 34083226 (-)
XLOC_037987 NA non-coding downstream 324370 34064509 ~ 34065606 (-)
XLOC_037986 NA non-coding downstream 446840 33942193 ~ 33943136 (-)
XLOC_038004 BX601644.3 non-coding upstream 452596 34848860 ~ 34851804 (-)
XLOC_038016 NA non-coding upstream 1284704 35680968 ~ 35832754 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03306370_03311820 NA coding CI01000009 null 3306289 ~ 3311820 (-)