LOC118944009 (LOC106613246)


Basic Information

Item Value
gene id LOC118944009
gene name LOC106613246
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 41988723 ~ 42023238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961134.1
AGCTGATTGGTGTTTACTCGGAAAACCCTCGTCCCCTTTGGCTAGCCAGTTTTGATCATGCAGAAAACTTTGaattagaaaataaaatacacGACTAGCTAGCCACGGCAACTGAGCCCTACTTCGCTATAAATAAGCAATCTACCACTTCTGTCTACTGTAAACAGGTCCTGCCCCCCAGCCTTCTCTGAAGCGATCTCTGCCCCTGTAGCAGCCttcacaccacacacagaaacacacgtacacacacgtacacacacgtacacacaggtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtggGCCTCTGGACGAGGATGACAATGGAAGAGATGAAGAATGAAGCGGAGATGACCTCGATGGTTTCCATGACACTCTACACTGTGATGTACCCCGTCTTCCACGAGTTGGAGAGAGTGAACCTGTCGGCCGCACAGACCCTGAGGGCAGCGTTTATAAAGGCTGAGAAGGAGAACCCAGGGCTGACCCAGGACATCATCATGAAGATCCTGGAGAAGAAAGGCGTGGAGGTCAACTTCATCGAGTCACTACTACGCATGGCTGCAGGCGACGTggaagagttcaTGATTGACAGGCCTGAGCAGGAGTTCCAGGACTTGAATGACAAGGCCCGGGCACTCAAACACATCCTCAGCAAGATCCCGGATGAAATCAACGACAGAGTACGCTTCTTACAGACCATCAAAGATATCGCCAGTGCCATAAAGGAACTCCTGGACATGGTCAACACTGTCTTCCGAAAATACCAGTACCAGAACCGAcggGCACTGgaacaccaaaagaaagagtTTGTGAAATACTCCAAGAGCTTCAGCGACACACTTAAAACCTACTTCAAAGATGGAAAGGCGATAAACGTGTTTGTCAGCGCGAACAGGCTCATCCACCAAACCAACCTAATACTGCAGACCTTCAAGACCGTGACATAGACTGGGGTTAACCACACCAACCCAGGCTTTTATCAGAGGACAGGAAACCCTTTATGTGTACAATGTTCAGATTCTGTTTCTGGGACTGTATCATTTATAAGTCTTGCTTCAAGAGGGAGATAATTTAGAGTTGCAGGCGGCCAGATTATAATTAAATTGacagagatttttttttattttttttattgtatttttttccaccaggatcatgctatctccacagagtatctcatgtcatgctatctccacagagtatctcatgtcatgctatct
>XM_036961131.1
ATAAAAACTACAACCGACAGCCAGTTTGGTGGCCAGCTGATTGGTGTTTACTCGGAAAACCCTCGTCCCCTTTGGCTAGCCAGTTTTGATCATGCAGAAAACTTTGaattagaaaataaaatacacGACTAGCTAGCCACGGCAACTGAGCCCTACTTCGCTATAAATAAGCAATCTACCACTTCTGTCTACTGTAAACAGGTCCTGCCCCCCAGCCTTCTCTGAAGCGATCTCTGCCCCTGTAGCAGCCttcacaccacacacagaaacacacgtacacacacgtacacacacgtacacacaggtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtggGCCTCTGGACGAGGATGACAATGGAAGAGATGAAGAATGAAGCGGAGATGACCTCGATGGTTTCCATGACACTCTACACTGTGATGTACCCCGTCTTCCACGAGTTGGAGAGAGTGAACCTGTCGGCCGCACAGACCCTGAGGGCAGCGTTTATAAAGGTAAGGACCCATACACCAAATCACTCTTCATGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGgtggagggacagggacaggacagcATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGTCAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATATAGGtaaggagatggagggacaggACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAAGAGATACAGGGACAGGACAGCATTTATAAAGGTAAGGACTCATACACCAAATCACTCTTCATGGGAAAGGACAGGAGTTTATGAGAAACAGAATAGTCCTGAGGGGTATTTTAGGAAGCAggatgagatgtttctacaacttgattggagtccacctgtggtacattcaattgattagacatgatttggaa
>XM_036961132.1
ATGTCAATAAAAACTACAACCGACAGCCAGTTTGGTGGCCAGCTGATTGGTGTTTACTCGGAAAACCCTCGTCCCCTTTGGCTAGCCAGTTTTGATCATGCAGAAAACTTTGaattagaaaataaaatacacGACTAGCTAGCCACGGCAACTGAGCCCTACTTCGCTATAAATAAGCAATCTACCACTTCTGTCTACTGTAAACAGACAAGCTGAATTGCACCATTTCCTGAGGTCCTGCCCCCCAGCCTTCTCTGAAGCGATCTCTGCCCCTGTAGCAGCCttcacaccacacacagaaacacacgtacacacacgtacacacacgtacacacaggtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtacacacacgtggGCCTCTGGACGAGGATGACAATGGAAGAGATGAAGAATGAAGCGGAGATGACCTCGATGGTTTCCATGACACTCTACACTGTGATGTACCCCGTCTTCCACGAGTTGGAGAGAGTGAACCTGTCGGCCGCACAGACCCTGAGGGCAGCGTTTATAAAGGTAAGGACCCATACACCAAATCACTCTTCATGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAGGGAGgtggagggacagggacaggacagcATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGTCAGGGACAGGACAGCGTTTATAAAGGTAAGGAGGTGGAGGGACAGGACAGCATTTAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAGGAGGTGGAGGGTCAGGGACAGGACAGCATTTATATAGGtaaggagatggagggacaggACAGCATTTATAAAGGTAGGGAGGTGGAGGAACAGGGACAGGACAGCATTTATAAAGGTAAAGAGATACAGGGACAGGACAGCATTTATAAAGGTAAGGACTCATACACCAAATCACTCTTCATGGGAAAGGACAGGAGTTTATGAGAAACAGAATAGTCCTGAGGGGTATTTTAGGAAGCAggatgagatgtttctacaacttgattggagtccacctgtggtacattcaattgattagacatgatttggaa
>TU2211565
TGATTAGCAGAGCCTGATGCTGTGTACTCTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGCGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTTTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCctggtgatgtgtgttttgtggtTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTCTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTGTTCTGCGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTCTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGATGTGTACTCTGTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGATTAGCAGAGCCTGGTGATGTGTACTCTGGTTGATTAGCAGAGCCTGATGCTGTGTACTCTGTGGTTGTCAGGCTGAGAAGGAGAACCCAGGGCTGACCCAGGACATCATCATGAAGATCCTGGAGAAGAAAGGCGTGGAGGTCAACTTCATCGAGTCACTACTACGCATGGCTGCAGGCGACGTggaagagttcaTGATTGACAGGCCTGAGCAGGAGTTCCAGGACTTGAATGACAAGGCCCGGGCACTCAAACACATCCTCAGCAAGATCCCGGATGAAATCAACGACAGAAGATATCGCCAGTGCCATAAAGGAACTCCTGGACATGGTCAACACTGTCTTCCGAAAATACCAGTACCAGAACCGAcggGCACTGgaacaccaaaagaaagagtTTGTGAAATACTCCAAGAGCTTCAGCGACACACTTAAAACCTACTTCAAAGATGGAAAGGCGATAAACGTGTTTGTCAGCGCGAACAGGCTCATCCACCAAACCAACCTAATACTGCAGACCTTCAAGACCGTGACATAGACTGGGGTTAACCACACCAACCCAGGCTTTTATCAGAGGACAGGAAACCCTTTATGTGTACAATGTTCAGATTCTGTTTCTGGGACTGTATCATTTATAAGTCTTGCTTCAAGAGGGAGATAATTTAGAGTTGCAGGCGGCCAGATTATAATTAAATTG

Function

NR:

description
programmed cell death protein 10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961134.1 False 1274 mRNA 0.47 8 41988723 42023198
XM_036961131.1 False 1448 mRNA 0.48 3 42010278 42023232
XM_036961132.1 False 1481 mRNA 0.48 4 42010278 42023238
TU2211565 True 2288 TUCP 0.48 5 41988837 42003428

Neighbor

gene id symbol gene type direction distance location
zbbx zbbx coding downstream 123176 41776956 ~ 41865547 (-)
LOC118944045 NA coding downstream 613015 41362542 ~ 41375708 (-)
LOC118944043 NA coding downstream 1608243 40370130 ~ 40380480 (-)
LOC110503403 fam168a coding downstream 1866818 40027973 ~ 40121905 (-)
LOC118944096 NA coding downstream 1963562 40023797 ~ 40025161 (-)
LOC110489558 LOC106613247 coding upstream 67345 42090565 ~ 42170024 (-)
LOC110489559 LOC106613248 coding upstream 88431 42111669 ~ 42121837 (-)
LOC110490901 LOC106613249 coding upstream 167380 42190618 ~ 42215786 (-)
LOC110503214 LOC106581444 coding upstream 334762 42358000 ~ 42370595 (-)
aplp2 LOC102785027 coding upstream 509296 42532534 ~ 42673783 (-)
G1933338 NA non-coding downstream 6283 41980016 ~ 41982440 (-)
G1933329 NA non-coding downstream 67465 41919459 ~ 41921258 (-)
G1933266 NA non-coding downstream 211960 41776399 ~ 41776763 (-)
G1933273 NA non-coding downstream 216805 41770045 ~ 41771918 (-)
G1933271 NA non-coding downstream 223759 41764750 ~ 41764964 (-)
G1933397 neus non-coding upstream 42020 42065258 ~ 42099963 (-)
G1933419 NA non-coding upstream 91991 42115229 ~ 42115565 (-)
G1933427 NA non-coding upstream 115436 42138674 ~ 42139771 (-)
G1933439 NA non-coding upstream 162485 42185723 ~ 42186102 (-)
G1932422 NA other downstream 831990 41156371 ~ 41156733 (-)
G1931785 NA other downstream 1522856 40465620 ~ 40465867 (-)
G1931133 LOC106613217 other downstream 2638084 39319414 ~ 39350639 (-)
dhx34 dhx34 other downstream 2901720 39058690 ~ 39087005 (-)
G1930981 LOC106613377 other downstream 3008743 38976417 ~ 38982781 (-)
G1933401 NA other upstream 49889 42073127 ~ 42075939 (-)
G1933529 NA other upstream 376659 42399897 ~ 42400327 (-)
G1934061 NA other upstream 1096727 43119965 ~ 43153967 (-)
G1934102 NA other upstream 1176135 43199373 ~ 43199815 (-)
G1935283 NA other upstream 2234058 44257296 ~ 44258661 (-)

Expression


Co-expression Network