XLOC_000380


Basic Information

Item Value
gene id XLOC_000380
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32010262 ~ 32011794 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003083
GATGGCAGCAGCAAGTTTTCCGCTCATTTAATGCCAAAACAGGTGAGTTGTTTTGTACGTGTTATCGAAATTATAACGTAGTAATTTTATTTGAACAAAGAGAGTATTGCAGAGTGTAACGTTACGCTTTCTGCCTTTAACGTTACTGCGAATGCCTCATAAAATGTCACTCATAAATTTAGTTTTAGACAGCTTTCCTATCTTTACACATgcttaaaatctaaatttttaccGTCTGTTTATTCGTTTGTGCGTAAATGGTATGGGTATGTTGttgaaacttattttaaatgtgattgaaTCAACCAATGCAATCCCATTTATTATTTAACGTCGCAAATTATGTGCTATTGAGCATTTTACACATGGTACACGATGTCTGTAAGTGATTCTGATTGGGAATGTGGAGAATGAATTCGTATCCTTACATGTATACCGTTAACAGCATTTCTTTTACGTTTGCCGTCAGCTAGTGCGTATAATTTTGAAAGATTTTAAGGCGGGTTAATGTACACTGATTTAGTGTTCCTTTTTTCAAACGGAGACTCGAATCCTTGCGTGTCACGCTGGAAAAATAACGAACTATGCATGAAGCAAGTAGAATCAAAAGTAAGTTTTTCCTTTCCATTTTTGCTTGAAAACAAAATCATTTGCTTAACTTTAAGTTATACCGTTTTACATTAAGGATAGCAATTTAGTGTATGACGTCTGCCGCTgtggtaaatgttttattaatactgCAAATGTTACTGATAATATATTCTAATATTCGTTTTATCATCTTTCTCCTGGAAAAGTCTAATGTTActatttactaatattatttttcatCGACGTTTGAAGGAAAAATGTACTAAccagtcaatgttttttttatatttcgagTTAAAATCCTGCACTAAGACCGGTTTTGTGCAAAGATTTGAATCTAATGTTTTTTGTGACTTGTCCAACTATTGCAAGAATCCACAGAATGTTAAACTCTCCATATTGTGCAAAGTTGGATGTCTACTTTTAAAGAAATGTGGTAAACCAGACTTAGAATTTTGAAGaacattgatatttatttatataaatgtttttctttttttgtttgttagtgttTATTACCCAAACTCTATTATAATCATATCTTTTATTTCTAACCAGATGATCAACAGAATGCTGTTTAAAGTACAGTATCAAGCTCGTAAGAGATACATGAAGCTTCCAGTATTGGAATATGATGCCCTTATACGGGAAGGTAAGttttcatacaattttttttgatacctggcattttttttgtttttttggctaaTGTCTCTATATATTAGTTTAGCCTAAAACACGTTTAGAAACAGATATTATGAAACAACTGAtggaaaattgtaatttatttaaatatttgtttttctattcacctaattatattatttattttatgccatTTTGTGTAGTCAAGGAGAAATTTGGTATATCTCCAGATCATACCATTTATTTGGCAGACGAGACCGGAACTGAAGTGGATGAAGATGTTTTTGCTGATATTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003083 True 1533 lncRNA 0.32 1 32010262 32011794

Neighbor

gene id symbol gene type direction distance location
XLOC_000379 anos1a coding upstream 30752 31942961 ~ 31979510 (+)
XLOC_000378 inab coding upstream 142545 31864404 ~ 31867717 (+)
XLOC_000377 cnnm2b coding upstream 210903 31725154 ~ 31799359 (+)
XLOC_000376 as3mt coding upstream 287387 31706668 ~ 31722875 (+)
XLOC_000375 wbp1lb coding upstream 310307 31674297 ~ 31699955 (+)
XLOC_000381 NA coding downstream 86 32011880 ~ 32012378 (+)
XLOC_000382 BX901898.2 coding downstream 1894 32013688 ~ 32014487 (+)
XLOC_000383 BX901898.1 coding downstream 5643 32017437 ~ 32018115 (+)
XLOC_000384 sts coding downstream 39787 32051581 ~ 32077473 (+)
XLOC_000385 pudp coding downstream 329690 32341484 ~ 32385665 (+)
XLOC_000371 CT573247.1 non-coding upstream 489290 31519239 ~ 31520972 (+)
XLOC_000370 NA non-coding upstream 650943 31354585 ~ 31359319 (+)
XLOC_000369 NA non-coding upstream 865735 31141119 ~ 31144527 (+)
XLOC_000365 BX548015.2 non-coding upstream 1150738 30853969 ~ 30859524 (+)
XLOC_000361 BX255890.2 non-coding upstream 1782757 30227391 ~ 30227505 (+)
XLOC_000386 CU462859.1 non-coding downstream 502195 32513989 ~ 32514104 (+)
XLOC_000388 CU915272.1 non-coding downstream 694315 32706109 ~ 32706227 (+)
XLOC_000390 BX322647.1 non-coding downstream 1203447 33215241 ~ 33216718 (+)

Expression


Co-expression Network