LOC110503290 (LOC106613395)


Basic Information

Item Value
gene id LOC110503290
gene name LOC106613395
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 43434126 ~ 43439279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962030.1
CCAAACCCAGCATTACTCACACCACATCAGGGTCACCTGAAATTAGTATAACAAGCTAAAAAAAAAATGACTTATGATGAGGGCTCATTTGAGGACGGGGGTCTTTTCTATGGCTTTGATAACTACTCAGAGTTGCTGGAGAGTCCTGACAACAGTAGCAGTGATACTGAGTACACCTGTAATGACGGAGCAGGTCTCCAGCTGTTTCATACTGTGTTCCAACCCCTGGTCTACAGTCTGGTGTTCTTCCTGGGGctgacaggtacacacacacctgtttcaTACTGTGTTCAAACCACTGGTCTACAGCCTGGTGTTCCTACGGGATCTTCCAATAGTCCAGGTAACGGGCTGATGTTAACGGTGCTGCTGAAACGCCGTGGCCTCCTGCGGATCACAGAGATCTATCTGTTACACCTGGGCCTGGCTGATCTGATGCTGCTAGCCACCTTCCCCTTCGCACTGGCACAGGTGTCCTTGGGGGTGGTGTTCGGAGACGTCCTGTGTAAACTGATTGGGCTGATGAACCGACTCAACTTCCTTTGTGGGAGTCTCCTCCTGGCATGTATCGGCTTCGACCGTTACCTGGCCATCGTGCATGCCATCACCAGCCTCCAGAGCCGACGCCCCAGGAACGTACACCTCACCTGCCTGGCACTGTGGCTCGTCTGTCTGGCCTTGTCTGTTCCCAATGctgtgttcctgtctgtaggGGAGAGTCCCATAGACCCGACTCAGCTCTCATGCTTCTTCCACAGTCACGGTCTCCATGCAAACAACTGGGATCTGACGGAGCGGCTCCTGACCCACGTGCTGTGTTTCTTCCTGCCTCTCGGGGTCATGACCTATTGCTACGCTGCGGTGGCGGTCACCCTGCACCATAGCCAGAGAGGTCAGCGCAGCCTGGAGAAAGAGGGAGCCATCAGGCTGGCTGCACTAGTCACTGCTGTGTTCTGCCTGTGCTGGCTGCCCTACAACATCACCATGCTGGTGAAGACCCTGGTGGATCGGGGGTTGGACTCTGGTTTGAGCTGCCAGTCCCGGACTAGTTTGGATAAGGCCTTGGTGGTGACAGAGAGCCTGGGGTACACACACTGCTGCCTCAACCCGCTGCTGTACGCCTTCACTGGGGTACGGTTTCGACAGGATCTCCTGAGACTGCTGGCCCACTGAGTCTATGGTAAAGGGGTGTACTCCAACGGGGACGGGGGAGTAACACGTCAGCGTCATTCTCTAAAGGACTCACCACCACGAAAATCCTCATGTTGACCACCAGATTTGACTGTTACAACTAAGGTGAAAATGTGTCTTACACCTCGTTTCTTTAAAAGGATACTGACGGTTCATTCTGATCTTTGAATGAATTATGAGTAAaactattgtattttcagcttaCAAATGAATTTTACTGTTACAACTAAgagctgggggaggggggggggggttactgttagAGCTTGTGAATCATTGATCAACCCCTCTGTATGTCTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTATGGGGTTGTGGATCAATAATCAACCCTCTGTATGACTAATCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCTGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACACTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACACTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTATGGGGTTGTGACAACACATTCACCTGCTTGTGCAAGCCtcgtgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat
>XM_036962032.1
CCAAACCCAGCATTACTCACACCACATCAGGGTCACCTGAAATTAGTATAACAAGCTAAAAAAAAAATGACTTATGATGAGGGCTCATTTGAGGACGGGGGTCTTTTCTATGGCTTTGATAACTACTCAGAGTTGCTGGAGAGTCCTGACAACAGTAGCAGTGATACTGAGTACACCTGTAATGACGGAGCAGGTCTCCAGCTGTTTCATACTGTGTTCCAACCCCTGGTCTACAGTCTGGTGTTCTTCCTGGGGctgacagGTAACGGGCTGATGTTAACGGTGCTGCTGAAACGCCGTGGCCTCCTGCGGATCACAGAGATCTATCTGTTACACCTGGGCCTGGCTGATCTGATGCTGCTAGCCACCTTCCCCTTCGCACTGGCACAGGTGTCCTTGGGGGTGGTGTTCGGAGACGTCCTGTGTAAACTGATTGGGCTGATGAACCGACTCAACTTCCTTTGTGGGAGTCTCCTCCTGGCATGTATCGGCTTCGACCGTTACCTGGCCATCGTGCATGCCATCACCAGCCTCCAGAGCCGACGCCCCAGGAACGTACACCTCACCTGCCTGGCACTGTGGCTCGTCTGTCTGGCCTTGTCTGTTCCCAATGctgtgttcctgtctgtaggGGAGAGTCCCATAGACCCGACTCAGCTCTCATGCTTCTTCCACAGTCACGGTCTCCATGCAAACAACTGGGATCTGACGGAGCGGCTCCTGACCCACGTGCTGTGTTTCTTCCTGCCTCTCGGGGTCATGACCTATTGCTACGCTGCGGTGGCGGTCACCCTGCACCATAGCCAGAGAGGTCAGCGCAGCCTGGAGAAAGAGGGAGCCATCAGGCTGGCTGCACTAGTCACTGCTGTGTTCTGCCTGTGCTGGCTGCCCTACAACATCACCATGCTGGTGAAGACCCTGGTGGATCGGGGGTTGGACTCTGGTTTGAGCTGCCAGTCCCGGACTAGTTTGGATAAGGCCTTGGTGGTGACAGAGAGCCTGGGGTACACACACTGCTGCCTCAACCCGCTGCTGTACGCCTTCACTGGGGTACGGTTTCGACAGGATCTCCTGAGACTGCTGGCCCACTGAGTCTATGGTAAAGGGGTGTACTCCAACGGGGACGGGGGAGTAACACGTCAGCGTCATTCTCTAAAGGACTCACCACCACGAAAATCCTCATGTTGACCACCAGATTTGACTGTTACAACTAAGGTGAAAATGTGTCTTACACCTCGTTTCTTTAAAAGGATACTGACGGTTCATTCTGATCTTTGAATGAATTATGAGTAAaactattgtattttcagcttaCAAATGAATTTTACTGTTACAACTAAgagctgggggaggggggggggggttactgttagAGCTTGTGAATCATTGATCAACCCCTCTGTATGTCTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTATGGGGTTGTGGATCAATAATCAACCCTCTGTATGACTAATCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCTGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACACTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACACTCAGTATGACTAACCTCTCTTTATGGGGTTGTGGATCAATAATCAACCCTCAGTATGACTAACCTCTATGGGGTTGTGACAACACATTCACCTGCTTGTGCAAGCCtcgtgtacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacat

Function

NR:

description
LOW QUALITY PROTEIN: C-X-C chemokine receptor type 5-like

GO: NA

KEGG:

id description
K04190 CXCR5, BLR1, CD185; C-X-C chemokine receptor type 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962030.1 False 2099 mRNA 0.49 5 43434126 43439279
XM_036962032.1 True 2018 mRNA 0.49 5 43434126 43439279

Neighbor

gene id symbol gene type direction distance location
LOC118944083 NA coding downstream 210142 43219074 ~ 43223984 (-)
aplp2 LOC102785027 coding downstream 760343 42532534 ~ 42673783 (-)
LOC110503214 LOC106581444 coding downstream 1063531 42358000 ~ 42370595 (-)
LOC110490901 LOC106613249 coding downstream 1218340 42190618 ~ 42215786 (-)
LOC110489559 LOC106613248 coding downstream 1312289 42111669 ~ 42121837 (-)
LOC118944046 NA coding upstream 63022 43502301 ~ 43504650 (-)
LOC118944047 NA coding upstream 210127 43649406 ~ 43650309 (-)
LOC118944048 NA coding upstream 213514 43652793 ~ 43654707 (-)
LOC118943990 nectin1 coding upstream 887509 44326788 ~ 44898432 (-)
LOC118943991 NA coding upstream 1154178 44593457 ~ 44595644 (-)
G1934320 NA non-coding downstream 6460 43427384 ~ 43427666 (-)
G1934299 NA non-coding downstream 41892 43390828 ~ 43392234 (-)
G1934301 NA non-coding downstream 53317 43366763 ~ 43380809 (-)
G1934267 NA non-coding downstream 130256 43300124 ~ 43303870 (-)
G1934263 NA non-coding downstream 136993 43296659 ~ 43297133 (-)
G1934332 NA non-coding upstream 1852 43441131 ~ 43526621 (-)
G1934333 NA non-coding upstream 23525 43462804 ~ 43463681 (-)
G1934306 NA non-coding upstream 30252 43469531 ~ 43471503 (-)
G1934349 NA non-coding upstream 39975 43479254 ~ 43479695 (-)
G1934356 NA non-coding upstream 53325 43492604 ~ 43493843 (-)
G1934102 NA other downstream 234311 43199373 ~ 43199815 (-)
G1934061 NA other downstream 280159 43119965 ~ 43153967 (-)
G1933529 NA other downstream 1033799 42399897 ~ 42400327 (-)
G1933401 NA other downstream 1358187 42073127 ~ 42075939 (-)
LOC118944009 LOC106613246 other downstream 1430698 41988723 ~ 42023238 (-)
G1935283 NA other upstream 818017 44257296 ~ 44258661 (-)
G1935421 NA other upstream 1081876 44521155 ~ 44521439 (-)
G1935467 NA other upstream 1139743 44579022 ~ 44585392 (-)
G1935978 NA other upstream 1956753 45396032 ~ 45397761 (-)

Expression


Co-expression Network