LOC118943990 (nectin1)


Basic Information

Item Value
gene id LOC118943990
gene name nectin1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 44326788 ~ 44898432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961057.1
TCAGATACATTGTGCCAGTTCAGGTTGTGGCGTCTTTGTGGGAAAATCCGCATACCGGGATTGCAGGCTATTTCATGAAAAGAGCTTTGGTTATTTAATGACAAGTATTGATCGAATGAACTACCGGATAAAAGTCAGCTCTTTCTACTGAGTCAACTGAGGGAGAAAAAAAGAACTATATCTCCTGATTCCATTGCCGGGAGAAAGAGGGAACTTCGGCTATTGTTTCGTTCAAAACAAGTAAAGAAGATCGTTGCAGAACTGCCCTCTATTGGATATCATCTGCAGCTAAGGACGCAAATAATTCAGAACAACTATCCGTTGTATTTTCTGGAACTTGTCATTGAGACGTCGAGCACCTCCCGCCCCCTCGCCTCTATTCCAGAATACTAGAGGGGGGGTAGGCAGTGGCGAACTGCAGCACTGGGTGAAACACGGGATTCAAGGTAGACGGAGGATAGCCTGCTGCCTGATTTCACCACAATATAAACCTCTATTTGGACGATTTATATTCCCCCGTTCAGTCACCTAACTCCGATAAGAACGTATCGTCTCGGTTGTTCGGTTGTGCGTAAATTGCGCCGTGGATATCTTTCCAGCTCGCGGGAGATCAACTCATCAGTCTACCGTTCACCGTTTCGAGTTGCGTAGTTCAGAGCTACTGAACGTAGGGATAGATAACTAGTCAGTCAAGTCGGCTCGCATTAATTCATTAGTTTGAAAGTAGTTCCACATCGACTCCGGGTCTCAAGGTAACGGCGTATTCCCAACCAACGGACGGACTGGAATTTGCGCTCGAGTTGCATGCCTGGTCTAAATCATCTGGACTGAACATATTCCATCCACTCAGGGGAAGCTATCACAGAGGTCCGGAGAGTTGGAAGCGCCATGGCGATGTTGGCGACTGTTTGGATAGTCCTTCTGGCTGTCAATATACAAGctGGAGATGGACAGAGTGTCCAGATGGACTCCATTAAGTCAGGCTTCGTGGGCTCCCAGGTGGAGCTGCGGTGTATCTTCGTTAATTCCAACCCTCCAGTCAAGATCTCTCAGGTGACGTGGCAGAAGTTCCTGAACGGCACCAAACAGAACGTGGCCATCGCCAACCCGTCGCTGGGGGTGTCCGTGCTCCCGCCCTTCAAGGAGAGGGTGACCTTCAAGCAGGCTGCGGTCCGCCACCGCACCCCGTCTCTGGAGGATACCACCATCATGTTCTCCAACCTGAGGCTGTCTGATGAGGCCGCATACATCTGCGAGTACACCACCTTCCCTGCTGGGAACCGAGAGAACATGGtcaacctcaccgtgtttgcgCGACCTCTGACCCGAATGACCTTGACCACGCCTACCATCGTGGCCCGCCCCCAGAAGCGTAAGATGACTGTGGCAACATGCCTCTCGGCCAATGGGAAGCCTCAGAGCGTGATCAAGTGGGACACGAGGCTGAAGGGTGAGGCCACGTTCCAGGAGACGCAGAACAGCAACGGCACGGTGACCGTCCGCAGTAACTATGTGGTCGTGCcaagcagagagacacacaaacagaaacTCACCTGCATCGTAACCTACCGCAACGAGAGGATTACCGACAGTGTCGTGCTCAACGTGCAGTATGAACCGGAGGTGAAGATCGAGGGTTTTGATGGTAACTGGTACCTGAACCGTCAGGACGTCAGCCTCACCTGCAACACTGACGCTAACCCCCCTGTCACCGTCTACCAGTGGAAACTGTTGAATGGATCTCTTCCCAGCACCGTGGAGATTCGTAACAACTCTCTAATCTTCAAGGGGGCGGTGACCTACGAGCTAGCTGGAACATACGTGTGTGATGCCACCAATGGGATCGGGACTCGTACAGGTCTGGTCGAGGTTAACGTCACTGagAAGCCGATGGCCCGGGGTCCTCCTGGAGGAATATTGGGGGTGTTGGGAGGGGTCGTAGCCGCTGGTCTCATCATCGCCGTGGCTGTCACAGTCTTCATGGTTTACCGCCGGCAGCAGAAGACTCGCACCGAGACTGACAATGACCTGACCGACCTCCCGCCCGCCCACAAGCCGGCCCCTCCCCCGCCCAAAAAGAAGAGCAGCGATTTGAAGGGCCACTTGACATCCGATGACATCCAGGTGGTTCATCTGGACAAGGGCGAGGACATGCAGAAGCTTCCTCTCCAGCCTCCCTACTACGATATGGCGCCCTCCGAGTCAACCCCTTTCACTGACAAGCCGAACTGTGGGAGACACGAACTATCAAACCCGGCTGAACATGTGAGCTACCATCGAGTCTACAACAAGGAACACTGTCTCGAGTCACAACCAACTCAGGCCTACCCCCCTCCCGTTACCTTCTTACCCCAAAATCCCTACACACATCCTCCGTCCAACAACCCCCTGTACCCCGCCAGCTACCCTGCCCAAGGCCAAGGGCAGGGCGAGGCTCCACGACCCCTCTTCCCTAAGGAGCAGTCCGTGTGACGCCCCAAAATCAATCTGGAGCTCCAGCCCATTAAGAGCCAtcatcagagctggtgtaacctgAAATACCGGAAGCTACACCAAGCTTTGCTCTAAGGGTGTGAAtgctatgccccccccccctccccgccaaccacctctctctctctctctgtttctatgaGCCTGATGATGGAGTGGGCATCCCCTGCTATGATGGAAGTGTCAGTAGTTTGTGGACCTTAAAACCTTGTGTGTTGTGCACTGCATGTTCCACCGAGGCTGTCAGTAGGACCCCTCATCTTGTGCTGTTATTGTAGACACCACTGCCGTCACGTTCCACTCCACTCAGTCTCACCTCACCCTCACCACGCTACTGTAGGTGTGTTCTTCAAATAGCTGTCCTCAATGTCTTGATTGCTTCCATATCCTTGTATATGTTCATTTTTGACTTTTGCCAAGTGTTCAACAATGTACAATATACACCACTGTGTCACTCGAGATGTTATTTTCTTCTATTTCTTACTATTTCTCTTCCCACAGTGATAGGaacctcttttctcttcccacagTAGTAGGAACCTCctttctcttcccacattgatagggacctcttttctcttcccacattgata
>XM_036961060.1
TCAGATACATTGTGCCAGTTCAGGTTGTGGCGTCTTTGTGGGAAAATCCGCATACCGGGATTGCAGGCTATTTCATGAAAAGAGCTTTGGTTATTTAATGACAAGTATTGATCGAATGAACTACCGGATAAAAGTCAGCTCTTTCTACTGAGTCAACTGAGGGAGAAAAAAAGAACTATATCTCCTGATTCCATTGCCGGGAGAAAGAGGGAACTTCGGCTATTGTTTCGTTCAAAACAAGTAAAGAAGATCGTTGCAGAACTGCCCTCTATTGGATATCATCTGCAGCTAAGGACGCAAATAATTCAGAACAACTATCCGTTGTATTTTCTGGAACTTGTCATTGAGACGTCGAGCACCTCCCGCCCCCTCGCCTCTATTCCAGAATACTAGAGGGGGGGTAGGCAGTGGCGAACTGCAGCACTGGGTGAAACACGGGATTCAAGGTAGACGGAGGATAGCCTGCTGCCTGATTTCACCACAATATAAACCTCTATTTGGACGATTTATATTCCCCCGTTCAGTCACCTAACTCCGATAAGAACGTATCGTCTCGGTTGTTCGGTTGTGCGTAAATTGCGCCGTGGATATCTTTCCAGCTCGCGGGAGATCAACTCATCAGTCTACCGTTCACCGTTTCGAGTTGCGTAGTTCAGAGCTACTGAACGTAGGGATAGATAACTAGTCAGTCAAGTCGGCTCGCATTAATTCATTAGTTTGAAAGTAGTTCCACATCGACTCCGGGTCTCAAGGTAACGGCGTATTCCCAACCAACGGACGGACTGGAATTTGCGCTCGAGTTGCATGCCTGGTCTAAATCATCTGGACTGAACATATTCCATCCACTCAGGGGAAGCTATCACAGAGGTCCGGAGAGTTGGAAGCGCCATGGCGATGTTGGCGACTGTTTGGATAGTCCTTCTGGCTGTCAATATACAAGctGGAGATGGACAGAGTGTCCAGATGGACTCCATTAAGTCAGGCTTCGTGGGCTCCCAGGTGGAGCTGCGGTGTATCTTCGTTAATTCCAACCCTCCAGTCAAGATCTCTCAGGTGACGTGGCAGAAGTTCCTGAACGGCACCAAACAGAACGTGGCCATCGCCAACCCGTCGCTGGGGGTGTCCGTGCTCCCGCCCTTCAAGGAGAGGGTGACCTTCAAGCAGGCTGCGGTCCGCCACCGCACCCCGTCTCTGGAGGATACCACCATCATGTTCTCCAACCTGAGGCTGTCTGATGAGGCCGCATACATCTGCGAGTACACCACCTTCCCTGCTGGGAACCGAGAGAACATGGtcaacctcaccgtgtttgcgCGACCTCTGACCCGAATGACCTTGACCACGCCTACCATCGTGGCCCGCCCCCAGAAGCGTAAGATGACTGTGGCAACATGCCTCTCGGCCAATGGGAAGCCTCAGAGCGTGATCAAGTGGGACACGAGGCTGAAGGGTGAGGCCACGTTCCAGGAGACGCAGAACAGCAACGGCACGGTGACCGTCCGCAGTAACTATGTGGTCGTGCcaagcagagagacacacaaacagaaacTCACCTGCATCGTAACCTACCGCAACGAGAGGATTACCGACAGTGTCGTGCTCAACGTGCAGTATGAACCGGAGGTGAAGATCGAGGGTTTTGATGGTAACTGGTACCTGAACCGTCAGGACGTCAGCCTCACCTGCAACACTGACGCTAACCCCCCTGTCACCGTCTACCAGTGGAAACTGTTGAATGGATCTCTTCCCAGCACCGTGGAGATTCGTAACAACTCTCTAATCTTCAAGGGGGCGGTGACCTACGAGCTAGCTGGAACATACGTGTGTGATGCCACCAATGGGATCGGGACTCGTACAGGTCTGGTCGAGGTTAACGTCACTGagAAGCCGATGGCCCGGGGTCCTCCTGGAGGAATATTGGGGGTGTTGGGAGGGGTCGTAGCCGCTGGTCTCATCATCGCCGTGGCTGTCACAGTCTTCATGGTTTACCGCCGGCAGCAGAAGACTCGCACCGAGACTGACAATGACCTGACCGACCTCCCGCCCGCCCACAAGCCGGCCCCTCCCCCGCCCAAAAAGAAGAGCAGCGATTTGAAGGGCCACTTGACATCCGATGACATCCAGGTGGTTCATCTGGACAAGGGCGAGGACATGCAGAAGCTTCCTCTCCAGCCTCCCTACTACGATATGGCGCCCTCCGAGTCAACCCCTTTCACTGACAAGCCGAACTCTGACCACAAGGACTGTGATGTCCAGTATGCGGAGCTGGATACTGCGGCTCTGGCCTCCTCTCCCAGCCCACGAAGCTCAGTTCAAACTGCCGGGGACCTTGTCGAGTATGCAACCATCCAGTCTAGCTCACACTAGCGCATGCCATTATAGGCCTTTTCCCTCCGACTCTG
>XM_036961059.1
TCAGATACATTGTGCCAGTTCAGGTTGTGGCGTCTTTGTGGGAAAATCCGCATACCGGGATTGCAGGCTATTTCATGAAAAGAGCTTTGGTTATTTAATGACAAGTATTGATCGAATGAACTACCGGATAAAAGTCAGCTCTTTCTACTGAGTCAACTGAGGGAGAAAAAAAGAACTATATCTCCTGATTCCATTGCCGGGAGAAAGAGGGAACTTCGGCTATTGTTTCGTTCAAAACAAGTAAAGAAGATCGTTGCAGAACTGCCCTCTATTGGATATCATCTGCAGCTAAGGACGCAAATAATTCAGAACAACTATCCGTTGTATTTTCTGGAACTTGTCATTGAGACGTCGAGCACCTCCCGCCCCCTCGCCTCTATTCCAGAATACTAGAGGGGGGGTAGGCAGTGGCGAACTGCAGCACTGGGTGAAACACGGGATTCAAGGTAGACGGAGGATAGCCTGCTGCCTGATTTCACCACAATATAAACCTCTATTTGGACGATTTATATTCCCCCGTTCAGTCACCTAACTCCGATAAGAACGTATCGTCTCGGTTGTTCGGTTGTGCGTAAATTGCGCCGTGGATATCTTTCCAGCTCGCGGGAGATCAACTCATCAGTCTACCGTTCACCGTTTCGAGTTGCGTAGTTCAGAGCTACTGAACGTAGGGATAGATAACTAGTCAGTCAAGTCGGCTCGCATTAATTCATTAGTTTGAAAGTAGTTCCACATCGACTCCGGGTCTCAAGGTAACGGCGTATTCCCAACCAACGGACGGACTGGAATTTGCGCTCGAGTTGCATGCCTGGTCTAAATCATCTGGACTGAACATATTCCATCCACTCAGGGGAAGCTATCACAGAGGTCCGGAGAGTTGGAAGCGCCATGGCGATGTTGGCGACTGTTTGGATAGTCCTTCTGGCTGTCAATATACAAGctGGAGATGGACAGAGTGTCCAGATGGACTCCATTAAGTCAGGCTTCGTGGGCTCCCAGGTGGAGCTGCGGTGTATCTTCGTTAATTCCAACCCTCCAGTCAAGATCTCTCAGGTGACGTGGCAGAAGTTCCTGAACGGCACCAAACAGAACGTGGCCATCGCCAACCCGTCGCTGGGGGTGTCCGTGCTCCCGCCCTTCAAGGAGAGGGTGACCTTCAAGCAGGCTGCGGTCCGCCACCGCACCCCGTCTCTGGAGGATACCACCATCATGTTCTCCAACCTGAGGCTGTCTGATGAGGCCGCATACATCTGCGAGTACACCACCTTCCCTGCTGGGAACCGAGAGAACATGGtcaacctcaccgtgtttgcgCGACCTCTGACCCGAATGACCTTGACCACGCCTACCATCGTGGCCCGCCCCCAGAAGCGTAAGATGACTGTGGCAACATGCCTCTCGGCCAATGGGAAGCCTCAGAGCGTGATCAAGTGGGACACGAGGCTGAAGGGTGAGGCCACGTTCCAGGAGACGCAGAACAGCAACGGCACGGTGACCGTCCGCAGTAACTATGTGGTCGTGCcaagcagagagacacacaaacagaaacTCACCTGCATCGTAACCTACCGCAACGAGAGGATTACCGACAGTGTCGTGCTCAACGTGCAGTATGAACCGGAGGTGAAGATCGAGGGTTTTGATGGTAACTGGTACCTGAACCGTCAGGACGTCAGCCTCACCTGCAACACTGACGCTAACCCCCCTGTCACCGTCTACCAGTGGAAACTGTTGAATGGATCTCTTCCCAGCACCGTGGAGATTCGTAACAACTCTCTAATCTTCAAGGGGGCGGTGACCTACGAGCTAGCTGGAACATACGTGTGTGATGCCACCAATGGGATCGGGACTCGTACAGGTCTGGTCGAGGTTAACGTCACTGAATTCCCTAACAACCCGCCACCTGGGGGCCGTGAGATCCCGCAGGAGCAGCACAATGCGGGTGCCGTCATCGGGGGCGCCGTGGGCGGGGTCGTCCTGTTAGCGGCGGCCGCCACCCTGCTCTTTGTGTTCCTGCGCCGCCGCCAGCGCACCTTCAAGGGCGACTACAGCACCAAGAAGCAGGTGTTTGGGAACGGCTACAGCAAGGCCGGGGGCCTGCCAGCACACCCTCCCATCCCCAACAACCTGCAGTACCCAGACGACTCAGATGACGAGAAGAAGCCTGCCCAGATCGCTGTGACCGGAGGGTTTGAGGCGAGCGAGCGTGATTTTGACGGAGATGCGGAGGACTTGAAGAGGCCCTATTTCACAGTGGACGAAGGAGAGAGTCAAGATTATGATGAACGGACTCTCGCTTTCCAGTACAACCCCGGGCCGGATATAGCCGATGATATGGTGTCCCAAACCGATGGCTCTGTCATTTCAAAGAAAGAGTGGTATGTGTAGGGACGTGCAACAAACAACCAAACCAACCAAGCTCCCGTCCCACCCACTTACCATCGCACtagcaccaccactaccatcactactaccaccacaccaccacccctaacaccaccactactaccacctcaccaccacccctaacaccatcactactaccaccTCACCA

Function

symbol description
nectin1 Enables cell adhesion molecule binding activity and identical protein binding activity. Predicted to be involved in several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and positive regulation of viral entry into host cell. Predicted to act upstream of or within several processes, including camera-type eye development; desmosome organization; and enamel mineralization. Located in adherens junction. Implicated in cleft lip; cleft lip-palate-ectodermal dysplasia syndrome; cleft palate; and ectodermal dysplasia.

NR:

description
PREDICTED: nectin-1 isoform X6

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06081 NECTIN1, PVRL1, CD111; poliovirus receptor-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961057.1 False 3086 mRNA 0.52 9 44326788 44898432
XM_036961060.1 False 2402 mRNA 0.53 9 44362159 44898432
XM_036961059.1 True 2554 mRNA 0.53 6 44602629 44898432

Neighbor

gene id symbol gene type direction distance location
LOC118944048 NA coding downstream 672081 43652793 ~ 43654707 (-)
LOC118944047 NA coding downstream 676479 43649406 ~ 43650309 (-)
LOC118944046 NA coding downstream 822138 43502301 ~ 43504650 (-)
LOC110503290 LOC106613395 coding downstream 887509 43434126 ~ 43439279 (-)
LOC118944083 NA coding downstream 1102804 43219074 ~ 43223984 (-)
LOC110503298 yap1 coding upstream 402882 45301314 ~ 45370352 (-)
LOC118944063 NA coding upstream 435689 45334121 ~ 45336972 (-)
LOC110503441 cntn5 coding upstream 672646 45571078 ~ 45883165 (-)
G1935310 NA non-coding downstream 16241 44310061 ~ 44310547 (-)
G1935307 NA non-coding downstream 19313 44307257 ~ 44307475 (-)
G1934885 NA non-coding downstream 78559 44247944 ~ 44248229 (-)
G1934874 NA non-coding downstream 83985 44242584 ~ 44242803 (-)
G1934871 NA non-coding downstream 85509 44240804 ~ 44241279 (-)
G1935619 NA non-coding upstream 49861 44948293 ~ 44948535 (-)
G1935620 NA non-coding upstream 50345 44948777 ~ 44949155 (-)
G1935625 NA non-coding upstream 60041 44958473 ~ 44958830 (-)
G1935632 NA non-coding upstream 67445 44965877 ~ 44966241 (-)
G1935638 NA non-coding upstream 87916 44986348 ~ 44986557 (-)
G1935283 NA other downstream 68127 44257296 ~ 44258661 (-)
G1934102 NA other downstream 1126973 43199373 ~ 43199815 (-)
G1934061 NA other downstream 1172821 43119965 ~ 43153967 (-)
G1933529 NA other downstream 1926461 42399897 ~ 42400327 (-)
G1933401 NA other downstream 2250849 42073127 ~ 42075939 (-)
G1935978 NA other upstream 497600 45396032 ~ 45397761 (-)

Expression


Co-expression Network