XLOC_038001


Basic Information

Item Value
gene id XLOC_038001
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34592026 ~ 34812883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075414
CTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGATAAGCACCATGCTGACTGTCATCTGAGAAAGCTCGGCTGTTTGTGGAAGTTTGGAGATGTTGGATTGATCATGATGATGGGGAACGAAAGCTGTCTCTGCTGCTGGTGCATAATCATTAAGACTAGCACAGACACCCCCTGTTAGAGACCAGTGGATTGTGGGTCTTCACTTTACTTCTCCACACCACAGAGATGTGGACTGGACAGCCTTGTTAGGTGACAGAGGATACTAGTGCCCTTCAATCAGACCACCTGTCAGTGTACATGCTGCTGTTTTCCTCAGGCTGTGGACATTCAAGCTGTCATATAAGAGGCAGAATGCAGAGTGAAGACTATGACGGACGCCTGTGGGCATTCAATCACAGTGGATGAGGTTTCCCAGCACAGCCAGCTCAGCAAGGCCCATGTCAGTCACATGGCTAATGACCGTTTCAGTGACGGCTTCCTATCAACGTAATAAGAAGCACCTGTTAGCGGGGGAGCCCAAACTTCGAGAAGGGTGTAATCAACCCCGGGGGACTGATTGAATCCTTCCTTCTGACGGTGGAGATGCGCTTCAGTGCAATGCTGCATCCACCCAGGGCCACTGGAAAAAGATCTCCCCGGATTACTCGAGGACGGGCGCACCGGATGAGCCTTATTGCTTTGTGATTGTTCTACATTAACCCTCTGATGGTTCAAGAAGGCATTATTAAAGGTTTCCAGAGAGAAGAATTGCCGTTCTAATCATCTCTCTTTGAGCATGACGACTGTAAACGTGACGCAAGGGTAGCGTGCGGAAGTCTCGGCGGAAAACCTGGGATGGCTCCTGGTCGATTAAGGCCATTGTGTAATTTCATGTCTTCCTAAGTACAATGAGCAGCGAGATTAAGTTCAATTTGGACTTGCACTTGGATTTCCCCACCTCCGTCAAGGCCCGAGCCCCCGCCATGTCAGCCCGGGCCCACTGGGAAATCAGAGATCTCCAGACAGGTCACCGCTGGCCCATGTATATATTCATGGGCTTAATCTCGCATCATTTCGATGGTGTGAGGAAAAGAAATGCATTCCAT
>TCONS_00075415
CTGTCATCTGAGAAAGCTCGGCTGTTTGTGGAAGTTTGGAGATGTTGGATTGATCATGATGATGGGGAACGAAAGCTGTCTCTGCTGCTGGTGCATAATCATTAAGACTAGCACAGACACCCCCTGTTAGAGACCAGTGGATTGTGGGTCTTCACTTTACTTCTCCACACCACAGAGATGTGGACTGGACAGCCTTGTTAGGTGACAGAGGATACTAGTGCCCTTCAATCAGACCACCTGTCAGTGTACATGCTGCTGTTTTCCTCAGGCTGTGGACATTCAAGCTGTCATATAAGGTGATTCATTTTACATGTGCTCATAACAAAAGCTGACATCTGTGGTAAGCGGGGAAAGAAGTGAAGGTATGTGGTTGTAATCTCAAAGTGACAGCCAGTAATGTGCCTTAAACTTCagctttacaatttttttaatttacgagGTCCAGATTGAGTAAAATGATACAAGCATGGTCTAATAATTTGTTAAAAGCACAATATGTATGAGCTTTGCTTTGAAATATCTCAAAACCATTAGAACAATGTTAACTGTTAAAACAATGGATAAtgttcactgtaaaaataattattacattgtaaaaaaataaatcagctttAACTAGATTTTACTTAGTAACAAgttccacagatttttatttaacaaaggcCCATTGGAAAGCATGCATCAGCCTGCTTCttagcaaaatgtaaaataac
>TCONS_00075416
CTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGCACAGACACCCCCTGTTAGAGACCAGTGGATTGTGGGTCTTCACTTTACTTCTCCACACCACAGAGATGTGGACTGGACAGCCTTGTTAGGTGACAGAGGATACTAGTGCCCTTCAATCAGACCACCTGTCAGTGTACATGCTGCTGTTTTCCTCAGGCTGTGGACATTCAAGCTGTCATATAAGGTGATTCATTTTACATGTGCTCATAACAAAAGCTGACATCTGTGGTAAGCGGGGAAAGAAGTGAAGGTATGTGGTTGTAATCTCAAAGTGACAGCCAGTAATGTGCCTTAAACTTCagctttacaatttttttaatttacgagGTCCAGATTGAGTAAAATGATACAAGCATGGTCTAATAATTTGTTAAAAGCACAATATGTATGAGCTTTGCTTTGAAATATCTCAAAACCATTAGAACAATGTTAACTGTTAAAACAATGGATAAtgttcactgtaaaaataattattacattgtaaaaaaataaatcagctttAACTAGATTTTACTTAGTAACAAgttccacagatttttatttaacaaaggcCCATTGGAAAGCATGCATCAGCCTGCTTCttagcaaaatgtaaaataac
>TCONS_00074563
CCTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGGTTTTATGACACAATGGAGAGCAAACGCTGGCAGAATTTACACACTTGGATTGAACTATTCCTTCAAG
>TCONS_00075417
CTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGGCCCCTCCGCGGCCCAGGCTGAGCACCTTGCTCTGAATGGGAAATGAGGGCTTCGACAGATACATGCACCTCTGGAACCTGTTGGGTGTTCAGACACATGTCTTGCCCATCTCATTTTGAACAGGTTAAAAGACCACGTCAAGCGCAATTATATCGTGCCAGCATCTTCAGCAAAACCTTGCAGGAGACTTGTTTATTATGTTCTGATTTACTCTCAGGTGTGATTACAGCAAGGGCATTATTGGGAATCGTGATGATGAATTTATGTTTCTGCTGTTGATGCTGGTGGTTGTAGCTACGTAATAGTTATTAGCATTTCTTAGTACCTGGAAGtgccacacacacaaatgcacacacatata
>TCONS_00075418
CTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGGCTGATTCTTCATCCCATGGGAGCAACACGGGAAGACTGGACAAGCTGGCTCCTGTCATGGTCTACCGCGGAGGAGCAGAAGGCCGTCAGATATATACGTACTGCTTGTTTGTAG
>TCONS_00074565
CCTCGAGAGCGCGGGTTCACGCGAGTCGCACTTGTATTTGATAGGGGCGCGTGCTGGCGGTGTCAACATCACAGGATTTTAATTGACTTTTGGAGATGAGCTGGAGTACACAAAGGAGCCACCAAATGCTATCAAGAACTCATCAGCCCAGACGTTTTGTCCACGCGCGTGGTTTTAGCTGTCAACTTGGATATTGTAAAACAAAATCATCCTTAATGTTCTGCAGAAAAAGTCACCAACATCATAGACGGCCTGATGAGCTTTGCCAAGTGGATTCGTGTTTAATTGGTCCCTTGATGCCACATTGGACAGGTACTTGGACGGAAAAAATGGGCAAGGCCCGATACCCCAGAGGACGGCCTTAGCTTGCTGC

Function

GO:

id name namespace
GO:0015780 nucleotide-sugar transmembrane transport biological_process
GO:1901264 carbohydrate derivative transport biological_process
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport biological_process
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005338 nucleotide-sugar transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117583

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075414 False 1386 lncRNA 0.49 6 34592026 34812882
TCONS_00075415 False 713 lncRNA 0.38 2 34628721 34635018
TCONS_00075416 False 935 lncRNA 0.40 4 34628721 34812882
TCONS_00074563 False 402 lncRNA 0.46 4 34701942 34812883
TCONS_00075417 False 695 lncRNA 0.46 4 34712779 34812882
TCONS_00075418 False 448 lncRNA 0.48 4 34773424 34812882
TCONS_00074565 True 373 lncRNA 0.49 4 34773621 34812883

Neighbor

gene id symbol gene type direction distance location
XLOC_038000 NA coding downstream 4219 34546666 ~ 34587807 (-)
XLOC_037999 ppp2r3b coding downstream 82029 34484454 ~ 34509997 (-)
XLOC_037998 grtp1b coding downstream 195762 34389976 ~ 34396264 (-)
XLOC_037997 cd247l coding downstream 223184 34356895 ~ 34368842 (-)
XLOC_037996 NA coding downstream 236476 34350517 ~ 34355550 (-)
XLOC_038003 BX601644.2 coding upstream 23185 34836068 ~ 34842414 (-)
XLOC_038004 BX601644.3 coding upstream 35977 34848860 ~ 34851804 (-)
XLOC_038005 slc25a6 coding upstream 53693 34866576 ~ 34871900 (-)
XLOC_038006 asmtl coding upstream 59850 34872733 ~ 34882516 (-)
XLOC_038007 p2ry8 coding upstream 72050 34884933 ~ 34885902 (-)
XLOC_037995 BX294189.1 non-coding downstream 263524 34326430 ~ 34328502 (-)
XLOC_037988 NA non-coding downstream 508800 34069736 ~ 34083226 (-)
XLOC_037987 NA non-coding downstream 526420 34064509 ~ 34065606 (-)
XLOC_038016 NA non-coding upstream 868085 35680968 ~ 35832754 (-)
XLOC_038017 CR759895.1 non-coding upstream 888772 35701655 ~ 35701772 (-)
XLOC_038019 NA non-coding upstream 1177781 35990664 ~ 35995392 (-)
XLOC_038020 BX005438.1 non-coding upstream 1306077 36118960 ~ 36120526 (-)

Expression


Co-expression Network