LOC110503298 (yap1)


Basic Information

Item Value
gene id LOC110503298
gene name yap1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 45301314 ~ 45370352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961713.1
GTCTCAAATCTAAATCACAGTCGTAAGAATAGTTGATGAAACGTTGCTGTAGAGAAAGTTCTCCCCACTAGAGAAGAGGGATGTGGTCTCTGTAAAGGCTCTCTGTCCCAGTGAATGATCCCAAGCCCTGCCCATTCCGAGGTTCAGATCACATGAGTCAGAGTCGGATGTCCTGCCTGGAGTGTAGAACCAAGTCAGCTTCAACTTTACAACAGTGAGAAGGCAATGATTTACAATGCGCGCTGTCACTCCTGTTTCATGGCAAAATCGGTAAACTCTCGAAAGTTAATCTGTGCAGTTATTTGAGTTTCGCTCAAGATACGTTTTTAGCTGTTCTCTTTGTGTTTCTTTTTGGAAAAGTTACAGATACAGTTGGGTAGATATGCACGTTGTTATATTAGCTAGTGTGTCTTTCCGAAACAGCAGAAAGAAGAGTACACTTTTCGGAGATTACAATAGTTAGCACGTATATTAGCACGCCATATTGTTGGGAGAAAATACATTCACAATAAATTAACAACCTCATCGAATTTACTTTTGGAAGAATTTACTTTTGGAAGTTGGATGATTTGAGGTTTCAAGTTTCGTTCTGAAGAAAACTTTGCATTGATTTTGGCTCTTTGAATCTTTTCTATACATTTTTTTCTCGAGCAAAtacgttttgtattgtttttggAATAACCATGGATCCCAGCCAGCACAACCCTCCAGCCGGTCACCAGATAGTCCATGTCCGGGGAGACTCGGAGACTGATCTGGAGGCCCTTTTCAACGCTGTTATGAACCCGAAAAACACAATCGTCCCTGCCTCCGTCCCCATGAGGATGAGAAAGCTACCCGATTCCTTCTTCAAACCGCCTGAGCCAAAGTCCCACTCCAGACAAGCTAGCACAGATGCAGTTACGGCTGGTGCCCTCGCCCCCCACCATGTGCGTGCCCACTCATCTCCGGCCTCTCTACAGCTAGGGGCAGTGTCACCCCTGTTGGGCATGGTCCCAGCGGGCGCGCCTCCATCAAACCTCCGACAGTCGTCCTATGAGATCCCAGATGACATGCCCCTGCCCCCAGGTTGGGAGGTGGCTCAGACCCCCTCTGGACAGAGATACTTCCTCAACCACCTGGACCAGTCGACCACCTGGCTGGACCCTCGTAAGGCCCTCCTACAGATGAACCAGGCCCCTCCCACCAGCCCTGTACCAGTCCAGCAGCAGAACATCATGAGCCCAGCTAGTGGTCCTCTCCCTGACGGCTGGGAACAGGCCGGCACCTCTGAGGGAGAGATCTACTACATCAACCACAAGAACAAAACCACCTCCTGGCTCGACCCACGCCTGGAGCCGTGCTACAGCCTGAACCAGCAGCGTATCACCCAGAGTGCTCCTGGTAAGCAGGGGAGCCAGCTGCCTTCCAGCCCCCAAAGTGGAGGAGTCATGGGGGGCAGCAACCAGATAAAGCTCCAGCAGCtgcagatggagaaggagaggttgAGACTGAAACACCAGGAGCTGCTCCGCACCAGACCACAGGAGCTTGCTCTGAGGAACCAACTGCCCACCAGTATGGAGCAGGATGGGGGAACCCTTAACCCCGTGTCGTCCCCTGGGATGGGCCAGGACGCCCGAATCATGACCACCAACAGCAATGACCCATTCCTCAACAGTGGGACCTACCACTCCAGGGATGAGAGCACAGACAGTGGTCTGAGTATGAGCAGCTACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTGTGGACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTTTGGACAGTGTCCCCCGAACCCCTGATGACTTTCTCAACGGTGTGGACGAGATGGACACAGGGGACTCCCTGCCGGTCTCCATGGGAACACAGGCCAGTCGTTTCCCTGACTACTTGGACGTCATCCCGGGGACAGATGTAGACCTTGGCACGCTGGAGAACAAGAGCATGGCCGTGGAGGGGGAAGAGCTAATGCCTAGTCTCCAGGAAGCCTTGAGCTCCGACATCCTAAACGACATGGAGTCAGTTCTGGCAGCCACCAAGATGGACAAGGAGAACTTCCTCACATGGTTATAGACCAAGCCGGACCTGGGCCTGCTCACTGATAAGCTATAGTATACAACATCGGTTTACAAACTTTTTTTTGCTACTTGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCAATTGAGGTGGGTGTTCAGTCATGACCCACCAATTGAGATGGGTGTTTAGTCATGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCACACGATTTGAGCAGTGGAACAACATGCTCTGACCCGCAGGtatataggagagaggagaggagcctggGATTAGCTACAATGGGCTCTATAGGAGAGACACTGCTCTTCACTCCTATAGTCCACACGTTTACCTGCTGCCTAGTCAAACTCTCAGACCAGTGAACGATGTGTAGTTGCCTTGATTAAAATATTTTCCTCCTTCCTGGATATGAATGATATCTGTCATCGGGCAGCATACATGTTAACATGGCCGACTGAGGCACTGCTATTCTGTTGTTTCTATATCTTTCTTTTTGTTGTCTGTGTCTTCAAGGCTGGCCTGTGAACACACAATTTATTCAAAGGTCCCTGAATCTTTTCACACGGCTGGCATTCTCAATCTGTCCATCATCTTTACCTGGTTGTTTCTCTACCACACCTTTACATCTAGGGTGTCTTACCTGCTGGCCGGCCGGCAAGGCAAGGGGCCTGCTGCTCTCCTTATCCCCCAACCCCCACATCTGATCTGGGTGGCTGCCTGCCTGTACTCCTCTCACCTCGGCCCCAGGCTTCCTGACAATAGCATTCAAGCATTGTATTATCCTGCCTTTTTTTCTTTTAATTCATGTATTTTACATTGTTGTTTTAAATAGTTTTTGTTTTTAATGATGAGCCGGAGAAAACCCAAAATGATATATCTGAagttgtgtcaagaactgtattGATTTGGAAGGTTAGTTTAGGTACGTTAGGTTAGGGCTTCGCCCCAAATGGCACATATTCCTgacatagtacactactatggCCCCtggtagtagtgcactagataaggtatagggtgctatttgggacataaCCTGGTTTACACAAGCTGGAGTCCCAGTTAGGACATGTTAGCTCTGTGTGGTGGTGATGGGGCTATTGCCTGGAGCCTGGGCCGGGGACCTCGCATACTatactcagtggtggaaaaagtacccaattgttatacttgaataaaaagtaaagataccttaatagaaaatgtctcaagtaaaagtgcaagtcacccagtaaaatactacctgagtaaaagtctaaaagtgtttgtttttaaattaactttagtatcaaaagtaaaagtataaatcacttAAAATTCCTTACATTAAACAAACCAGACctcaccattttcttgttttttaatttacagatagccaggggtacacgccaacataatttacaaaagatgcatgcatgtgtgtttacTGAGTccgccaaatcagaggcagtaggaatgaccagggatgttctcttgataagtttgTGAATTAGACTATTTTCCTGCCCTGCTAAGAATTCAAAATGTAAGGAgtgcttttgggtgtcagggaaaatgtatggattcaaaattacattattttatttaggaatgtagtgaagtacaaTTATAAGTTGTCAAAAAAGTAaataataaagtacagataccccaaaaaacgacttaagtagtactttaaagtatttttacttaagtactatACACCACTGGCTATACTATACAATATGATACATACGTACTGCTGCTTGGCTGTGCCAGCATGTTTATACGTTTTTGTCAAATCAAAGTGCCTTCAGTTGTATTTTTTGAGAGAAGAAGAGCAAGAAAATCTACACCAAGTAATAATACTAAATAATGTGTCTAAGAAGTTGTATTATTGCCAAACAAACATCAAAAATACTCTCCTCTACTTACGTTAATGTCCAATAATCAACAGTATGTTTCTGTTTTTCTAAAAACGTGTTATTATTATGGGACTtcagtaacactttacttgacacccttGACACGATCaaaaccatgtcataatatgtcttAACAGCTACCATAACCATACCATAACCTGTCATAACACTatcatgacccatatatttacacctgttgtgacatattgtgttatttcatggcTGGTTATGAACCCTATATGCTGtaagtttgttgttgttgttgttgttgttgtaatgaattgTTAACAGtcatcatattttaaataacttgtagAAAATACTCTTTATAACACTGTCAAGAAGCTTTATGACATCATAATCAGATAGGCTTTTCACGTACATCCCCTTATTTCAGTCATTAGTCAAAAAGatggtgtcttgtcctgctcctgtcctcctgtgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgt
>XR_005039359.1
GTCTCAAATCTAAATCACAGTCGTAAGAATAGTTGATGAAACGTTGCTGTAGAGAAAGTTCTCCCCACTAGAGAAGAGGGATGTGGTCTCTGTAAAGGCTCTCTGTCCCAGTGAATGATCCCAAGCCCTGCCCATTCCGAGGTTCAGATCACATGAGTCAGAGTCGGATGTCCTGCCTGGAGTGTAGAACCAAGTCAGCTTCAACTTTACAACAGTGAGAAGGCAATGATTTACAATGCGCGCTGTCACTCCTGTTTCATGGCAAAATCGGTAAACTCTCGAAAGTTAATCTGTGCAGTTATTTGAGTTTCGCTCAAGATACGTTTTTAGCTGTTCTCTTTGTGTTTCTTTTTGGAAAAGTTACAGATACAGTTGGGTAGATATGCACGTTGTTATATTAGCTAGTGTGTCTTTCCGAAACAGCAGAAAGAAGAGTACACTTTTCGGAGATTACAATAGTTAGCACGTATATTAGCACGCCATATTGTTGGGAGAAAATACATTCACAATAAATTAACAACCTCATCGAATTTACTTTTGGAAGAATTTACTTTTGGAAGTTGGATGATTTGAGGTTTCAAGTTTCGTTCTGAAGAAAACTTTGCATTGATTTTGGCTCTTTGAATCTTTTCTATACATTTTTTTCTCGAGCAAAtacgttttgtattgtttttggAATAACCATGGATCCCAGCCAGCACAACCCTCCAGCCGGTCACCAGATAGTCCATGTCCGGGGAGACTCGGAGACTGATCTGGAGGCCCTTTTCAACGCTGTTATGAACCCGAAAAACACAATCGTCCCTGCCTCCGTCCCCATGAGGATGAGAAAGCTACCCGATTCCTTCTTCAAACCGCCTGAGCCAAAGTCCCACTCCAGACAAGCTAGCACAGATGCAGTTACGGCTGGTGCCCTCGCCCCCCACCATGTGCGTGCCCACTCATCTCCGGCCTCTCTACAGCTAGGGGCAGTGTCACCCCTGTTGGGCATGGTCCCAGCGGGCGCGCCTCCATCAAACCTCCGACAGTCGTCCTATGAGATCCCAGATGACATGCCCCTGCCCCCAGGTTGGGAGGTGGCTCAGACCCCCTCTGGACAGAGATACTTCCTCAACCACCTGGACCAGTCGACCACCTGGCTGGACCCTCGTAAGGCCCTCCTACAGATGAACCAGGCCCCTCCCACCAGCCCTGTACCAGTCCAGCAGCAGAACATCATGAGCCCAGCTAGTGGTCCTCTCCCTGACGGCTGGGAACAGGCCGGCACCTCTGAGGGAGAGATCTACTACATCAACCACAAGAACAAAACCACCTCCTGGCTCGACCCACGCCTGGAGCCGTGCTACAGCCTGAACCAGCAGCGTATCACCCAGAGTGCTCCTGGTAAGCAGGGGAGCCAGCTGCCTTCCAGCCCCCAAAGTGGAGGAGTCATGGGGGGCAGCAACCAGATAAAGCTCCAGCAGCtgcagatggagaaggagaggttgAGACTGAAACACCAGGAGCTGCTCCGCACCAGACCACAGGAGCTTGCTCTGAGGAACCAACTGCCCACCAGTATGGAGCAGGATGGGGGAACCCTTAACCCCGTGTCGTCCCCTGGGATGGGCCAGGACGCCCGAATCATGACCACCAACAGCAATGACCCATTCCTCAACAGTGGGACCTACCACTCCAGGGATGAGAGCACAGACAGTGGTCTGAGTATGAGCAGCTACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTGTGGACAGTGTCCCCCGTACCCCCGACGACTTCCTCAACAGTTTGGACAGTGTCCCCCGAACCCCTGATGACTTTCTCAACGGTGTGGACGAGATGGACACAGGGGACTCCCTGCCGGTCTCCATGGGAACACAGGCCAGTCGTTTCCCTGACTACTTGGACGTCATCCCGGGGACAGATGTAGACCTTGGCACGCTGGAGAACAAGAGCATGGCCGTGGAGGGGGAAGAGCTAATGCCTAGTCTCCAGGAAGCCTTGAGCTCCGACATCCTAAACGACATGGAGTCAGTTCTGGCAGCCACCAAGATGGACAAGGAGAACTTCCTCACATGGTTATAGACCAAGCCGGACCTGGGCCTGCTCACTGATAAGCTATAGTATACAACATCGGTTTACAAACTTTTTTTTGCTACTTGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCAATTGAGGTGGGTGTTTAGTCATGACCCACCACACGATTTGAGCAGTGGAACAACATGCTCTGACCCGCAGGtatataggagagaggagaggagcctggGATTAGCTACAATGGGCTCTATAGGAGAGACACTGCTCTTCACTCCTATAGTCCACACGTTTACCTGCTGCCTAGTCAAACTCTCAGACCAGTGAACGATGTGTAGTTGCCTTGATTAAAATATTTTCCTCCTTCCTGGATATGAATGATATCTGTCATCGGGCAGCATACATGTTAACATGGCCGACTGAGGCACTGCTATTCTGTTGTTTCTATATCTTTCTTTTTGTTGTCTGTGTCTTCAAGGCTGGCCTGTGAACACACAATTTATTCAAAGGTCCCTGAATCTTTTCACACGGCTGGCATTCTCAATCTGTCCATCATCTTTACCTGGTTGTTTCTCTACCACACCTTTACATCTAGGGTGTCTTACCTGCTGGCCGGCCGGCAAGGCAAGGGGCCTGCTGCTCTCCTTATCCCCCAACCCCCACATCTGATCTGGGTGGCTGCCTGCCTGTACTCCTCTCACCTCGGCCCCAGGCTTCCTGACAATAGCATTCAAGCATTGTATTATCCTGCCTTTTTTTCTTTTAATTCATGTATTTTACATTGTTGTTTTAAATAGTTTTTGTTTTTAATGATGAGCCGGAGAAAACCCAAAATGATATATCTGAagttgtgtcaagaactgtattGATTTGGAAGGTTAGTTTAGGTACGTTAGGTTAGGGCTTCGCCCCAAATGGCACATATTCCTgacatagtacactactatggCCCCtggtagtagtgcactagataaggtatagggtgctatttgggacataaCCTGGTTTACACAAGCTGGAGTCCCAGTTAGGACATGTTAGCTCTGTGTGGTGGTGATGGGGCTATTGCCTGGAGCCTGGGCCGGGGACCTCGCATACTatactcagtggtggaaaaagtacccaattgttatacttgaataaaaagtaaagataccttaatagaaaatgtctcaagtaaaagtgcaagtcacccagtaaaatactacctgagtaaaagtctaaaagtgtttgtttttaaattaactttagtatcaaaagtaaaagtataaatcacttAAAATTCCTTACATTAAACAAACCAGACctcaccattttcttgttttttaatttacagatagccaggggtacacgccaacataatttacaaaagatgcatgcatgtgtgtttacTGAGTccgccaaatcagaggcagtaggaatgaccagggatgttctcttgataagtttgTGAATTAGACTATTTTCCTGCCCTGCTAAGAATTCAAAATGTAAGGAgtgcttttgggtgtcagggaaaatgtatggattcaaaattacattattttatttaggaatgtagtgaagtacaaTTATAAGTTGTCAAAAAAGTAaataataaagtacagataccccaaaaaacgacttaagtagtactttaaagtatttttacttaagtactatACACCACTGGCTATACTATACAATATGATACATACGTACTGCTGCTTGGCTGTGCCAGCATGTTTATACGTTTTTGTCAAATCAAAGTGCCTTCAGTTGTATTTTTTGAGAGAAGAAGAGCAAGAAAATCTACACCAAGTAATAATACTAAATAATGTGTCTAAGAAGTTGTATTATTGCCAAACAAACATCAAAAATACTCTCCTCTACTTACGTTAATGTCCAATAATCAACAGTATGTTTCTGTTTTTCTAAAAACGTGTTATTATTATGGGACTtcagtaacactttacttgacacccttGACACGATCaaaaccatgtcataatatgtcttAACAGCTACCATAACCATACCATAACCTGTCATAACACTatcatgacccatatatttacacctgttgtgacatattgtgttatttcatggcTGGTTATGAACCCTATATGCTGtaagtttgttgttgttgttgttgttgttgtaatgaattgTTAACAGtcatcatattttaaataacttgtagAAAATACTCTTTATAACACTGTCAAGAAGCTTTATGACATCATAATCAGATAGGCTTTTCACGTACATCCCCTTATTTCAGTCATTAGTCAAAAAGatggtgtcttgtcctgctcctgtcctcctgtgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcctcctgtgtcttgt
>TU2214843
TTAGCTCTGTGTGGTGGTGATGGGGCTATTGCCTGGAGCCTGGGCCGGGGACCTCGCATACTatactcagtggtggaaaaagtacccaattgttatacttgaataaaaagtaaagataccttaatagaaaatgtctcaagtaaaagtgcaagtcacccagtaaaatactacctgagtaaaagtctaaaagtgtttgtttttaaattaactttagtatcaaaagtaaaagtataaatcacttAAAATTCCTTACATTAAACAAACCAGACctcaccattttcttgttttttaatttacagatagccaggggtacacgccaacataatttacaaaagatgcatgcatgtgtgtttacTGAGTccgccaaatcagaggcagtaggaatgaccagggatgttctcttgataagtttgTGAATTAGACTATTTTCCTGCCCTGCTAAGAATTCAAAATGTAAGGAgtgcttttgggtgtcagggaaaatgtatggattcaaaattacattattttatttaggaatgtagtgaagtacaaTTATAAGTTGTCAAAAAAGTAaataataaagtacagataccccaaaaaacgacttaagtagtactttaaagtatttttacttaagtactatACACCACTGGCTATACTATACAATATGATACATACGTACTGCTGCTTGGCTGTGCCAGCATGTTTATACGTTTTTGTCAAATCAAAGTGCCTTCAGTTGTATTTTTTGAGAGAAGAAGAGCAAGAAAATCTACACCAAGTAATAATACTAAATAATGTGTCTAAGAAGTTGTATTATTGCCAAACAAACATCAAAAATACTCTCCTCTACTTACGTTAATGTCCAATAATCAACAGTATGTTTCTGTTTTTCTAAAAACGTGTTATTATTATGGGACTtcagtaacactttacttgacacccttGACACGATCaaaaccatgtcataatatgtcttAACAGCTACCATAACCATACCATAACCTGTCATAACACTatcatgacccatatatttacacctgttgtgacatattgtgttatttcatggcTGGTTATGAACCCTATATGCTGtaagtttgttgttgttgttgttgttgttgtaatgaattgTTAACAGtcatcatattttaaataacttgtagAAAATACTCTTTATAACACTGTCAAGAAGCTTTATGACATCATAATCAGATAGGCTTTTCACGTACATCCCCTTATTTCAGTCATTAGTCAAAAAGatggtgtcttgtcctgctcctgtcctcctgtgtcttgtcctgctcctgtcctcctgtgtcttgtcttgtcctgctcctgtcc

Function

symbol description
yap1 Involved in several processes, including dorsal/ventral axis specification; embryonic hemopoiesis; and heart formation. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; fin regeneration; and positive regulation of glutamate-ammonia ligase activity. Located in chromatin and nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; mesoderm; and tail bud. Used to study coloboma. Human ortholog(s) of this gene implicated in uveal coloboma-cleft lip and palate-intellectual disability. Orthologous to human YAP1 (Yes1 associated transcriptional regulator).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961713.1 False 4541 mRNA 0.46 8 45301314 45370352
XR_005039359.1 False 4479 mRNA 0.46 9 45301314 45370352
TU2214843 True 1323 lncRNA 0.35 1 45301358 45302680

Neighbor

gene id symbol gene type direction distance location
LOC118943990 nectin1 coding downstream 402882 44326788 ~ 44898432 (-)
LOC118943991 NA coding downstream 705670 44593457 ~ 44595644 (-)
LOC118944048 NA coding downstream 1646607 43652793 ~ 43654707 (-)
LOC118944047 NA coding downstream 1651005 43649406 ~ 43650309 (-)
LOC118944046 NA coding downstream 1796664 43502301 ~ 43504650 (-)
LOC110503441 cntn5 coding upstream 200726 45571078 ~ 45883165 (-)
G1935935 NA non-coding downstream 2448 45296606 ~ 45298866 (-)
G1935890 NA non-coding downstream 16877 45284196 ~ 45284437 (-)
G1935883 NA non-coding downstream 22349 45278678 ~ 45278965 (-)
G1935872 NA non-coding downstream 32505 45268596 ~ 45268809 (-)
G1935859 NA non-coding downstream 46504 45253906 ~ 45254810 (-)
G1935974 NA non-coding upstream 20917 45391269 ~ 45391501 (-)
G1935986 NA non-coding upstream 33459 45403811 ~ 45404056 (-)
G1936087 NA non-coding upstream 143589 45513941 ~ 45514543 (-)
G1936105 NA non-coding upstream 158956 45529308 ~ 45529593 (-)
G1936311 NA non-coding upstream 191534 45561886 ~ 45562126 (-)
G1935467 NA other downstream 715922 44579022 ~ 44585392 (-)
G1935421 NA other downstream 779875 44521155 ~ 44521439 (-)
G1935283 NA other downstream 1042653 44257296 ~ 44258661 (-)
G1934102 NA other downstream 2101499 43199373 ~ 43199815 (-)
G1934061 NA other downstream 2147347 43119965 ~ 43153967 (-)
G1935978 NA other upstream 25680 45396032 ~ 45397761 (-)
LOC118944063 NA coding upstream 31441 45334121 ~ 45336972 (-)
G1935945 NA non-coding upstream 25071 45327751 ~ 45375723 (-)

Expression


Co-expression Network