G1889740


Basic Information

Item Value
gene id G1889740
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 301150 ~ 351582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2161912
ggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttagggtattactctatcagttttgcacatcgagagactgaaatcttttcccattcctccttgcaaaacagctcgagctcagtgaggttggatggagagcagttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgccttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttctcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctatccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaaccttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagttgagggacggccaggtcttggtagatttgcagtggtctgatactccttccattattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatcttttcgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatccttagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgttgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaaatacagttttctctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcacggcactgtaGATAGGTAAACTATTCTACTATGGGGTGCCTGATTTTACTGTTTGTTACCCATTTTGTTGGCAGAAGCcctaatgtgtgtgtatgtatgcatgtatgtatgtacgaATGAAAAAACATGACGAGAAAAATAACCCCAATCTAATGGTGACACCTCATTGCTCATTTACAAAAGGCACAAAGAAAAACAAGAAACTGAATAAGAGATGAGAAACCCATGAGaagctttaatgactccaacctaagtgtaaacttcgacttcaactgtatatatatgtatg

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2161912 True 1704 lncRNA 0.42 2 301150 351582

Neighbor

gene id symbol gene type direction distance location
LOC110503514 LOC106580672 coding downstream 35029 256911 ~ 266121 (-)
LOC110503513 LOC106612442 coding downstream 47760 238150 ~ 253390 (-)
LOC110503512 LOC106612441 coding downstream 69380 171531 ~ 231770 (-)
LOC110503522 LOC106612503 coding upstream 153909 505491 ~ 507434 (-)
dock10 LOC106612453 coding upstream 185432 537014 ~ 714783 (-)
LOC110503524 shox2 coding upstream 497800 849382 ~ 856625 (-)
LOC110503527 med29 coding upstream 735645 1087227 ~ 1091024 (-)
LOC110503529 sik2 coding upstream 771150 1122732 ~ 1177173 (-)
G1889713 NA non-coding downstream 24838 276050 ~ 276312 (-)
G1889711 NA non-coding downstream 25709 274047 ~ 275441 (-)
G1889710 NA non-coding downstream 27776 273055 ~ 273374 (-)
G1889706 NA non-coding downstream 32902 268011 ~ 268248 (-)
G1889696 NA non-coding downstream 53753 245630 ~ 247397 (-)
G1889808 NA non-coding upstream 131324 482906 ~ 483169 (-)
G1889841 NA non-coding upstream 179570 531152 ~ 597524 (-)
G1889935 NA non-coding upstream 349123 700705 ~ 701122 (-)
G1890010 NA non-coding upstream 476410 827992 ~ 828200 (-)
G1889857 NA other upstream 205548 557130 ~ 559099 (-)
G1891499 NA other upstream 1450426 1802008 ~ 1805430 (-)
G1892841 NA other upstream 2584602 2936184 ~ 2937051 (-)
G1892888 NA other upstream 2661873 3013455 ~ 3019441 (-)

Expression


Co-expression Network