XLOC_038009 (cdc16)


Basic Information

Item Value
gene id XLOC_038009
gene name cdc16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34920001 ~ 34937256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074575
AAAACCCGTGTTTCCTCACGGAGTGTTATCAACGCAACACGGGTTTTATGCTAACCGCGGGCTTCAATCTGCACACAGAGGAACACTcacaaaagccatttttaatcATTTGCATTTGACAAGAATGCCATTATTTTGTATTTGACAGACAGTACAACCATCATGAATCTTGACAGGCTTCGTAAAAGAGTGAGACACTACATTGATCAGCAACAGTATCAAAGTGCTCTCTTCTGGGCCGACAAAATAGCATCCCTGTCACATGAGGATCCTCAAGATATTTATTGGTTAGCACAGTGCCTTTATTTGACAGCACAGTATCACAGAGCCTCTCATGCGCTCAGATCTCGCAAACTTGACAAGTTGTATGGGGCCTGTCAGTATCTAGCTGCAAGATGTCATTATGCTGCCAAAGAATATCAACAAGCTCTGGACATACTGGACATGGAGGAAGCAGCCAGTAAAAAGTTATTGGACAAGAATTTAAAGGAGGAGAATGGCTCAAGGGAAATTGTAAAAGATTGGGAAATGTCCCCTGCCTCAATCAATAGCTCCATCTGTCTCCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCCACGTCTAGCTACAAAGAGGCCTTGAAACTAGATGTCTACTGCTTTGAAGCCTTTGACCTTTTAACGTCCCATCACATGTTGACCGCTCAAGAGGAAAAAGATTTCTTGGATTCTCTGCCATTAAGTCAACAATGCACAGAAGAGGAAGTGGAGTTGCTGCATTTCCTGTTTGAAAACAAGTTAAAGAAGTATAACAAACCTAGCGAGATGGTGGTCCCAGATATAGTCAACGGTCTTCAGGACAACCTGGATGTTGTCGTCTCCCTTGCAGAGCGACATTATTACAACTGTGACTTCAAAATGTGCTACTCTCTTACGTCAATGGTTATGGTGAAAGACCCATTTCATGCCAACTGTTTACCGGTGCACATAGGAACCCTTGTAGAGCTGAGCAAAGCAAATGAGTTGTTTTACCTGTCTCATAAACTGGTGGATTTGTATCCTAGCAATCCAGTTTCATGGTTTGCTGTTGGATGTTACTACCTCATGGTTGGACATAAAAATGAACATGCAAGACGCTATCTCAGTAAAGCCACCACTCTggagcgcacgtacggcccagcGTGGATTGCATACGGCCACTCGTTCGCGGTAGAGAGTGAACATGACCAGGCCATGGCTGCATACTTCACCGCAGCACAGCTTATGAAAGGATGTCACCTGCCAATGCTGTACATCGGTCTAGAGTATGGACTCACTAATAACCCAAAGCTGGCGGAGCATTTTTTTAGTCAAGCCCTCAGCATCGCACCCGAGGACCCCTTTGTCATACATGAGGTGGCTGTGGTTGCCTTCCAAAATGGAGATTATAAAACATCTGAGAAGTTGTTTCTAGATGCTATGGAGAAGATCAAAGCCATTGGAAACGAGGTGACAGTAGACAAATGGGAGCCGCTCTTAAACAATTTGGGTCATGTGTGTCGAAAATTGAAGAAATACGAACAGGCTCTTGAATACCACAGGCAAGCTTTGGTTCTCATCCCACAGAATGCCTCAACTTACTCAGCCATCGGTTATGTGCACAGCCTCAAGGGAGATTTCGAAAGCGCCATTGACTACTTTCACACTgcACTTGGACTAAAAAGAGATGACACGTTTTCTGTCACCATGCTGGGCCACTGCATTGAGATGTATATCAGCGATTCAGATGCTTACATTGGAACTGATATAAAAGACAAAGTGAGAAAGactctcaacacacctgcactaATGAAGATGCTCAACACTTCTGCCGACGGCAACGAGAGCAGAGCACAACCCGTAGAAGAAGTAAACGTGTGCATAGAAACGCCATCATTCAATGCGGACAAACAAACCGATGCTTTTCAGCGCTTCCTCTTAGAATGTGACATGCATGAGAGCGACATGATGCTGGAGACGTCCATGTCTGACACCAGCACATGATTTGAGACCTGTAAACGGCTCAAAGAGGAACTTAAAGCATGAAATGATGAAAGAATGTGATGCAGACGAGGACGTGACACTCCctccctcctcctccacctcgATCGTGTCCTCTGTGTTGGACCCCTGTGGATTTTTTTACTATGAATAAATGTAAAGAAGTGAATGCAAAAGGGTTCGAATGATTTAATCAATAAACCCTGCATCCATATTTTTACACCGA
>TCONS_00074576
AGCACAACCAGTGTAGCTTCAATTTGCACACCAAATTAGATTTGATCAATGCATGAGACTTTAAAGCTGAGTATATTATATTACACAATCGGAATATTACATAAAGACAACAGTATCAAAGTGCTCTCTTCTGGGCCGACAAAATAGCATCCCTGTCACATGAGGATCCTCAAGATATTTATTGGTTAGCACAGTGCCTTTATTTGACAGCACAGTATCACAGAGCCTCTCATGCGCTCAGATCTCGCAAACTTGACAAGTTGTATGGGGCCTGTCAGTATCTAGCTGCAAGATGTCATTATGCTGCCAAAGAATATCAACAAGCTCTGGACATACTGGACATGGAGGAAGCAGCCAGTAAAAAGTTATTGGACAAGAATTTAAAGGAGGAGAATGGCTCAAGGGAAATTGTAAAAGATTGGGAAATGTCCCCTGCCTCAATCAATAGCTCCATCTGTCTCCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCCACGTCTAGCTACAAAGAGGCCTTGAAACTAGATGTCTACTGCTTTGAAGCCTTTGACCTTTTAACGTCCCATCACATGTTGACCGCTCAAGAGGAAAAAGATTTCTTGGATTCTCTGCCATTAAGTCAACAATGCACAGAAGAGGAAGTGGAGTTGCTGCATTTCCTGTTTGAAAACAAGTTAAAGAAGTATAACAAACCTAGCGAGATGGTGGTCCCAGATATAGTCAACGGTCTTCAGGACAACCTGGATGTTGTCGTCTCCCTTGCAGAGCGACATTATTACAACTGTGACTTCAAAATGTGCTACTCTCTTACGTCAAT

Function

symbol description
cdc16 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051301 cell division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation
ko05166 Human T-cell leukemia virus 1 infection
ko01009 Protein phosphatases and associated proteins
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-051113-132 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

Ensembl:

ensembl_id ENSDARG00000055470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074575 False 2236 mRNA 0.45 18 34920001 34937256
TCONS_00074576 True 829 mRNA 0.43 8 34931878 34937025
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Neighbor

gene id symbol gene type direction distance location
XLOC_038008 upf3a coding downstream 4607 34902971 ~ 34915394 (-)
XLOC_038007 p2ry8 coding downstream 34099 34884933 ~ 34885902 (-)
XLOC_038006 asmtl coding downstream 37485 34872733 ~ 34882516 (-)
XLOC_038005 slc25a6 coding downstream 48101 34866576 ~ 34871900 (-)
XLOC_038004 BX601644.3 coding downstream 68197 34848860 ~ 34851804 (-)
XLOC_038010 dcun1d2a coding upstream 1060 34938316 ~ 34945582 (-)
XLOC_038011 METTL21C coding upstream 33162 34970418 ~ 34974416 (-)
XLOC_038012 si:ch211-160b11.4 coding upstream 41611 34978867 ~ 34986827 (-)
XLOC_038013 appb coding upstream 89159 35026415 ~ 35161005 (-)
XLOC_038014 ncam2 coding upstream 233079 35170335 ~ 35557397 (-)
XLOC_038001 NA non-coding downstream 107118 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding downstream 166842 34753044 ~ 34753159 (-)
XLOC_038000 NA non-coding downstream 332194 34546666 ~ 34587807 (-)
XLOC_037996 NA non-coding downstream 564451 34350517 ~ 34355550 (-)
XLOC_038016 NA non-coding upstream 743712 35680968 ~ 35832754 (-)
XLOC_038017 CR759895.1 non-coding upstream 764399 35701655 ~ 35701772 (-)
XLOC_038019 NA non-coding upstream 1053408 35990664 ~ 35995392 (-)
XLOC_038020 BX005438.1 non-coding upstream 1181704 36118960 ~ 36120526 (-)
XLOC_038021 NA non-coding upstream 1462655 36399911 ~ 36413250 (-)

Expression

Expression of XLOC_038009(cdc16) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_038009(cdc16) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network