XLOC_038009 (cdc16)


Basic Information

Item Value
gene id XLOC_038009
gene name cdc16
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34920001 ~ 34937256 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074575
AAAACCCGTGTTTCCTCACGGAGTGTTATCAACGCAACACGGGTTTTATGCTAACCGCGGGCTTCAATCTGCACACAGAGGAACACTcacaaaagccatttttaatcATTTGCATTTGACAAGAATGCCATTATTTTGTATTTGACAGACAGTACAACCATCATGAATCTTGACAGGCTTCGTAAAAGAGTGAGACACTACATTGATCAGCAACAGTATCAAAGTGCTCTCTTCTGGGCCGACAAAATAGCATCCCTGTCACATGAGGATCCTCAAGATATTTATTGGTTAGCACAGTGCCTTTATTTGACAGCACAGTATCACAGAGCCTCTCATGCGCTCAGATCTCGCAAACTTGACAAGTTGTATGGGGCCTGTCAGTATCTAGCTGCAAGATGTCATTATGCTGCCAAAGAATATCAACAAGCTCTGGACATACTGGACATGGAGGAAGCAGCCAGTAAAAAGTTATTGGACAAGAATTTAAAGGAGGAGAATGGCTCAAGGGAAATTGTAAAAGATTGGGAAATGTCCCCTGCCTCAATCAATAGCTCCATCTGTCTCCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCCACGTCTAGCTACAAAGAGGCCTTGAAACTAGATGTCTACTGCTTTGAAGCCTTTGACCTTTTAACGTCCCATCACATGTTGACCGCTCAAGAGGAAAAAGATTTCTTGGATTCTCTGCCATTAAGTCAACAATGCACAGAAGAGGAAGTGGAGTTGCTGCATTTCCTGTTTGAAAACAAGTTAAAGAAGTATAACAAACCTAGCGAGATGGTGGTCCCAGATATAGTCAACGGTCTTCAGGACAACCTGGATGTTGTCGTCTCCCTTGCAGAGCGACATTATTACAACTGTGACTTCAAAATGTGCTACTCTCTTACGTCAATGGTTATGGTGAAAGACCCATTTCATGCCAACTGTTTACCGGTGCACATAGGAACCCTTGTAGAGCTGAGCAAAGCAAATGAGTTGTTTTACCTGTCTCATAAACTGGTGGATTTGTATCCTAGCAATCCAGTTTCATGGTTTGCTGTTGGATGTTACTACCTCATGGTTGGACATAAAAATGAACATGCAAGACGCTATCTCAGTAAAGCCACCACTCTggagcgcacgtacggcccagcGTGGATTGCATACGGCCACTCGTTCGCGGTAGAGAGTGAACATGACCAGGCCATGGCTGCATACTTCACCGCAGCACAGCTTATGAAAGGATGTCACCTGCCAATGCTGTACATCGGTCTAGAGTATGGACTCACTAATAACCCAAAGCTGGCGGAGCATTTTTTTAGTCAAGCCCTCAGCATCGCACCCGAGGACCCCTTTGTCATACATGAGGTGGCTGTGGTTGCCTTCCAAAATGGAGATTATAAAACATCTGAGAAGTTGTTTCTAGATGCTATGGAGAAGATCAAAGCCATTGGAAACGAGGTGACAGTAGACAAATGGGAGCCGCTCTTAAACAATTTGGGTCATGTGTGTCGAAAATTGAAGAAATACGAACAGGCTCTTGAATACCACAGGCAAGCTTTGGTTCTCATCCCACAGAATGCCTCAACTTACTCAGCCATCGGTTATGTGCACAGCCTCAAGGGAGATTTCGAAAGCGCCATTGACTACTTTCACACTgcACTTGGACTAAAAAGAGATGACACGTTTTCTGTCACCATGCTGGGCCACTGCATTGAGATGTATATCAGCGATTCAGATGCTTACATTGGAACTGATATAAAAGACAAAGTGAGAAAGactctcaacacacctgcactaATGAAGATGCTCAACACTTCTGCCGACGGCAACGAGAGCAGAGCACAACCCGTAGAAGAAGTAAACGTGTGCATAGAAACGCCATCATTCAATGCGGACAAACAAACCGATGCTTTTCAGCGCTTCCTCTTAGAATGTGACATGCATGAGAGCGACATGATGCTGGAGACGTCCATGTCTGACACCAGCACATGATTTGAGACCTGTAAACGGCTCAAAGAGGAACTTAAAGCATGAAATGATGAAAGAATGTGATGCAGACGAGGACGTGACACTCCctccctcctcctccacctcgATCGTGTCCTCTGTGTTGGACCCCTGTGGATTTTTTTACTATGAATAAATGTAAAGAAGTGAATGCAAAAGGGTTCGAATGATTTAATCAATAAACCCTGCATCCATATTTTTACACCGA
>TCONS_00074576
AGCACAACCAGTGTAGCTTCAATTTGCACACCAAATTAGATTTGATCAATGCATGAGACTTTAAAGCTGAGTATATTATATTACACAATCGGAATATTACATAAAGACAACAGTATCAAAGTGCTCTCTTCTGGGCCGACAAAATAGCATCCCTGTCACATGAGGATCCTCAAGATATTTATTGGTTAGCACAGTGCCTTTATTTGACAGCACAGTATCACAGAGCCTCTCATGCGCTCAGATCTCGCAAACTTGACAAGTTGTATGGGGCCTGTCAGTATCTAGCTGCAAGATGTCATTATGCTGCCAAAGAATATCAACAAGCTCTGGACATACTGGACATGGAGGAAGCAGCCAGTAAAAAGTTATTGGACAAGAATTTAAAGGAGGAGAATGGCTCAAGGGAAATTGTAAAAGATTGGGAAATGTCCCCTGCCTCAATCAATAGCTCCATCTGTCTCCTGCGGGGGAAGATCTATGATGCCATGGACAACAGACCCCTGGCCACGTCTAGCTACAAAGAGGCCTTGAAACTAGATGTCTACTGCTTTGAAGCCTTTGACCTTTTAACGTCCCATCACATGTTGACCGCTCAAGAGGAAAAAGATTTCTTGGATTCTCTGCCATTAAGTCAACAATGCACAGAAGAGGAAGTGGAGTTGCTGCATTTCCTGTTTGAAAACAAGTTAAAGAAGTATAACAAACCTAGCGAGATGGTGGTCCCAGATATAGTCAACGGTCTTCAGGACAACCTGGATGTTGTCGTCTCCCTTGCAGAGCGACATTATTACAACTGTGACTTCAAAATGTGCTACTCTCTTACGTCAAT

Function

symbol description
cdc16 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

GO:

id name namespace
GO:0045842 positive regulation of mitotic metaphase/anaphase transition biological_process
GO:0007049 cell cycle biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051301 cell division biological_process
GO:0007091 metaphase/anaphase transition of mitotic cell cycle biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation
ko05166 Human T-cell leukemia virus 1 infection
ko01009 Protein phosphatases and associated proteins
ko04121 Ubiquitin system
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-051113-132 Acts upstream of or within mitotic cell cycle. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Is expressed in digestive system; head; heart; and immature eye. Orthologous to human CDC16 (cell division cycle 16).

Ensembl:

ensembl_id ENSDARG00000055470

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074575 False 2236 mRNA 0.45 18 34920001 34937256
TCONS_00074576 True 829 mRNA 0.43 8 34931878 34937025

Neighbor

gene id symbol gene type direction distance location
XLOC_038008 upf3a coding downstream 4607 34902971 ~ 34915394 (-)
XLOC_038007 p2ry8 coding downstream 34099 34884933 ~ 34885902 (-)
XLOC_038006 asmtl coding downstream 37485 34872733 ~ 34882516 (-)
XLOC_038005 slc25a6 coding downstream 48101 34866576 ~ 34871900 (-)
XLOC_038004 BX601644.3 coding downstream 68197 34848860 ~ 34851804 (-)
XLOC_038010 dcun1d2a coding upstream 1060 34938316 ~ 34945582 (-)
XLOC_038011 METTL21C coding upstream 33162 34970418 ~ 34974416 (-)
XLOC_038012 si:ch211-160b11.4 coding upstream 41611 34978867 ~ 34986827 (-)
XLOC_038013 appb coding upstream 89159 35026415 ~ 35161005 (-)
XLOC_038014 ncam2 coding upstream 233079 35170335 ~ 35557397 (-)
XLOC_038001 NA non-coding downstream 107118 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding downstream 166842 34753044 ~ 34753159 (-)
XLOC_038000 NA non-coding downstream 332194 34546666 ~ 34587807 (-)
XLOC_037996 NA non-coding downstream 564451 34350517 ~ 34355550 (-)
XLOC_038016 NA non-coding upstream 743712 35680968 ~ 35832754 (-)
XLOC_038017 CR759895.1 non-coding upstream 764399 35701655 ~ 35701772 (-)
XLOC_038019 NA non-coding upstream 1053408 35990664 ~ 35995392 (-)
XLOC_038020 BX005438.1 non-coding upstream 1181704 36118960 ~ 36120526 (-)
XLOC_038021 NA non-coding upstream 1462655 36399911 ~ 36413250 (-)

Expression


Co-expression Network