Item | Value |
---|---|
gene id | XLOC_038013 |
gene name | appb |
gene type | coding |
species | zebrafish (Danio rerio) |
category of species | model fish |
Item | Value |
---|---|
chromosome id | NC_007120.7 |
NCBI id | CM002893.2 |
chromosome length | 56459846 |
location | 35026415 ~ 35161005 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
symbol | description |
---|---|
appb | Predicted to enable heparin binding activity; serine-type endopeptidase inhibitor activity; and transition metal ion binding activity. Acts upstream of or within several processes, including convergent extension; nervous system development; and regulation of Notch signaling pathway. Predicted to be located in Golgi-associated vesicle and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial vasculature; axis; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in APP-related cerebral amyloid angiopathy; Alzheimer's disease; Alzheimer's disease 1; cognitive disorder; and visual epilepsy. Orthologous to human APP (amyloid beta precursor protein). |
id | name | namespace |
---|---|---|
GO:0008593 | regulation of Notch signaling pathway | biological_process |
GO:0007399 | nervous system development | biological_process |
GO:0048675 | axon extension | biological_process |
GO:0007409 | axonogenesis | biological_process |
GO:0045664 | regulation of neuron differentiation | biological_process |
GO:0007417 | central nervous system development | biological_process |
GO:0060026 | convergent extension | biological_process |
GO:0001944 | vasculature development | biological_process |
GO:0031175 | neuron projection development | biological_process |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005515 | protein binding | molecular_function |
GO:0008201 | heparin binding | molecular_function |
GO:0046914 | transition metal ion binding | molecular_function |
GO:0004867 | serine-type endopeptidase inhibitor activity | molecular_function |
id | description |
---|---|
ZDB-GENE-020220-1 | Predicted to enable heparin binding activity; serine-type endopeptidase inhibitor activity; and transition metal ion binding activity. Acts upstream of or within several processes, including convergent extension; nervous system development; and regulation of Notch signaling pathway. Predicted to be located in Golgi-associated vesicle and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial vasculature; axis; nervous system; pronephric duct; and spinal cord neural rod. Human ortholog(s) of this gene implicated in APP-related cerebral amyloid angiopathy; Alzheimer's disease; Alzheimer's disease 1; cognitive disorder; and visual epilepsy. Orthologous to human APP (amyloid beta precursor protein). |
ensembl_id | ENSDARG00000055543 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TCONS_00074584 | False | 4099 | mRNA | 0.48 | 16 | 35026415 | 35069777 |
TCONS_00074587 | False | 2202 | mRNA | 0.54 | 16 | 35028297 | 35069645 |
TCONS_00074586 | False | 2256 | mRNA | 0.54 | 17 | 35028297 | 35069645 |
TCONS_00074585 | False | 1089 | mRNA | 0.53 | 11 | 35028297 | 35069645 |
TCONS_00074588 | False | 2416 | mRNA | 0.53 | 17 | 35028297 | 35155089 |
TCONS_00075419 | False | 1147 | lncRNA | 0.35 | 3 | 35154055 | 35160615 |
TCONS_00075004 | True | 475 | lncRNA | 0.39 | 3 | 35154830 | 35161005 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
XLOC_038012 | si:ch211-160b11.4 | coding | downstream | 39588 | 34978867 ~ 34986827 (-) |
XLOC_038011 | METTL21C | coding | downstream | 51999 | 34970418 ~ 34974416 (-) |
XLOC_038010 | dcun1d2a | coding | downstream | 80833 | 34938316 ~ 34945582 (-) |
XLOC_038009 | cdc16 | coding | downstream | 89159 | 34920001 ~ 34937256 (-) |
XLOC_038008 | upf3a | coding | downstream | 111021 | 34902971 ~ 34915394 (-) |
XLOC_038014 | ncam2 | coding | upstream | 9330 | 35170335 ~ 35557397 (-) |
XLOC_038015 | zp2l1 | coding | upstream | 470435 | 35631440 ~ 35633827 (-) |
XLOC_038016 | NA | coding | upstream | 519963 | 35680968 ~ 35832754 (-) |
XLOC_038017 | CR759895.1 | coding | upstream | 540650 | 35701655 ~ 35701772 (-) |
XLOC_038018 | dnajc28 | coding | upstream | 711693 | 35872698 ~ 35875051 (-) |
XLOC_038004 | BX601644.3 | non-coding | downstream | 174611 | 34848860 ~ 34851804 (-) |
XLOC_038001 | NA | non-coding | downstream | 213532 | 34592026 ~ 34812883 (-) |
XLOC_038002 | BX601644.5 | non-coding | downstream | 273256 | 34753044 ~ 34753159 (-) |
XLOC_038000 | NA | non-coding | downstream | 438608 | 34546666 ~ 34587807 (-) |
XLOC_037996 | NA | non-coding | downstream | 670865 | 34350517 ~ 34355550 (-) |
XLOC_038019 | NA | non-coding | upstream | 829659 | 35990664 ~ 35995392 (-) |
XLOC_038020 | BX005438.1 | non-coding | upstream | 957955 | 36118960 ~ 36120526 (-) |
XLOC_038021 | NA | non-coding | upstream | 1238906 | 36399911 ~ 36413250 (-) |