XLOC_038018 (dnajc28)


Basic Information

Item Value
gene id XLOC_038018
gene name dnajc28
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35872698 ~ 35875051 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074594
ATAAATATATAACAACAAACCCTAGTGCATACATTGAAGAGCGGTGTCACTCATAACATAAATATTGTTGACCTTTTGTCACGATGAAGTGGGAAAATTCGAACTGAATCCGCGAGAAGCTGTATCCATGAGGCACAATGAGCTGCTTGGTGTTACGGTTGCACAGTCTGGACCTCCGCAGGTCTGTCTTGCCCCTGTATTCCTCCCTCACACTGCGATCCTTCAGCTCTGGAGCTCTCAGCCGCAGCTTGAGAGAGAGTTACCGTCTCCTGCAACTGCCAGATGATGGAGCCAGTGGCCCTGCAGAGGTCAAAGAGGCTTACCTCCGCATGGCCAAACTCTACCATCCCGATTCCGGTGCTCCCACAGCAGACGCGGACCTGTTTTCCCAGATTGAGGAGGCCTATCGGGCTGTGCTCGCCCACCTCGCTCGGCAGAAGTCAGCTTCACAGTACACCCAATCTATGGAGGAAGACGAGGACGAGAAAGTGAAAGGTAATGCTCCTCAACACAGACAATACCTGAGTTTTGAAGGCGTTGGTTCTGGAACTCCTAGTCAGAGAGAACGACAATACAGACAATTTCGAGTTGATCGTGCTACCGATCAGGTCTTGGAGTATCGACGCAAGGAGATGGAGAAGGCAGCCGCAGAAGAAGGAGCAATGGTGGCCCGGGATGCACGTTTGCGCAGTAAGAAGATTAAAATCACTCAAGCGGTGGAAAGGCTGGTTGAGGATCTCATCCAGGAATCAATGGCTCGTGGAGACTTTCAGAACCTCAGCGGCACTGGTAAACCGCTCAATAAGTTTGATTACAACCCATACATGGATCCAATGACGCACAACCTCAACAGAATCCTCATCGACAACGGTTACCAGCCTGAATGGATTGTGGCACAGAAGGAGATCAGGGAAAGCATCTGTAAAATGAGGGAGAGGTTGCAGGAGGTCAGGGCTAGGTTAGGGGAACCCATGAGACACTCAGAAAGCCTCCAGTGGAAGGAGCATTGCGCTGTGTTTGCTGAGGAACTGGCGAAACTCAATAAGAAAGTGGACAATTTTAATCTGATAGTGCCTCTTTTGAGCAGGCAGATGGTGCATTATAGTCTGACGAGAGAGCTGGAGAAGATACTGAAAACCGATCTGCTGCTCAGGCAGGAgaaggagagagaaaaagaaaggaatGAAAAGGAGCAGATGGAGACGACGGAAATGTCTCAGCACACCAGACAAGGACTCATCGCATGGATGCAGAATCTGCTGAAATGAGGTTGTGTGTTGTTGCTATAACTGTCATACAGTGTGGAATAGTTATTGTCTTGTTTAATTGAACAATTGaagattaataacaataaatactaTCATGGTGATATAAA

Function

symbol description
dnajc28 Predicted to be involved in Golgi organization; Golgi vesicle prefusion complex stabilization; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of Golgi transport complex. Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28).

GO:

id name namespace
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0048213 Golgi vesicle prefusion complex stabilization biological_process
GO:0007030 Golgi organization biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-050417-130 Predicted to be involved in Golgi organization; Golgi vesicle prefusion complex stabilization; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of Golgi transport complex. Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28).

Ensembl:

ensembl_id ENSDARG00000018181

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074594 True 1375 mRNA 0.48 2 35872698 35875051

Neighbor

gene id symbol gene type direction distance location
XLOC_038016 NA coding downstream 39944 35680968 ~ 35832754 (-)
XLOC_038017 CR759895.1 coding downstream 170926 35701655 ~ 35701772 (-)
XLOC_038015 zp2l1 coding downstream 238871 35631440 ~ 35633827 (-)
XLOC_038014 ncam2 coding downstream 315301 35170335 ~ 35557397 (-)
XLOC_038013 appb coding downstream 711693 35026415 ~ 35161005 (-)
XLOC_038019 NA coding upstream 115613 35990664 ~ 35995392 (-)
XLOC_038020 BX005438.1 coding upstream 243909 36118960 ~ 36120526 (-)
XLOC_038021 NA coding upstream 524860 36399911 ~ 36413250 (-)
XLOC_038022 NA coding upstream 870484 36745535 ~ 36746819 (-)
XLOC_038023 CR932978.3 coding upstream 885838 36760889 ~ 36761294 (-)
XLOC_038004 BX601644.3 non-coding downstream 1020894 34848860 ~ 34851804 (-)
XLOC_038001 NA non-coding downstream 1059815 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding downstream 1119539 34753044 ~ 34753159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_04196309_04197268 DNAJC28 coding CI01000009 null 4196309 ~ 4197268 (-)