G1892970


Basic Information

Item Value
gene id G1892970
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 3170898 ~ 3173962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2165471
gttCTTATAAAACAATGAAAACAATTTACACTTTTAAATGTACAGTCATTGATACAACATCCCCCAGAAAAACAACGTTCAACCGTAAGTTTTCGTCGATGCATAAAGATCCCCCATTGCCTCATGCAGAACGCACCAACACagaaaaacaattgaaatcagCCTTGAACAAAGATTTAAAAGTCAAACAGCAATACATAGAAATAAAAAACACGGTGCCCTCTTCATTTCACTATTTTGTCTTTTTCAGGTTGCAAAAGTGGCcaaaaataaattatacaaatattaaaacataaaaaataaaaaaaatcatataATTGATCAATTTACCAAGTTTCGGTATTACCATTTCTGATTTGTGCACGTGCAACATCGATGCACCGAGCTCTGTTCAACATGTATAACTGCAGTTTGCTTAAAATCAAATATATCAAAACTAAATCCTCAAAAACACccgtacccctccacacacacacacaaataaacaaaataaagatTAAGACATTGAAGATAACAACATCACAGCACATTTGCTGAGCTTCAGTGATAACATGAGTGTGTAGGGTTGTTTCAGTTGCTCTTGGTTTCGCCCAAGACGAGATGATTTAACTGGCTGGAGGAGGATGGGCAGCTTACAGGACACAGGGAGGCAGACTACAACAGCGTCTGTGGATGGGGCAGTGATGAGCAAATACCAGAGATGGTGAGATGAAGAGAAACGGGGACAGAGATGTCTGTATACATGTTGCTCTTATCTAAACGTAATGTCTCTCAACAATGTACAGATGTAtttgaaagagtgtgtgtgtgggggggggggggggggggggcagtgttgAGTAGTGTGTTTTGTATGTTTGTGTGCCACATGCGTGTGAATGTCCACTGATCCAGCCACAAAAGGGTTGACACCGTCCAGGTACATGCCCACACACAAAACAATACATAGTACAGTTCTTAAAGGGGGTGTCTGAAAGGTCCTGAGAGTAGTGAGGGTAAGAAAGGATTCCAGTTGAGGCAGGGCAGAAGGTTCCTGAAAAGAGGGGGTCTGTGATGAAAGGGTACTTAACTGTGCTCGGGGCTTACGTTTACTGGAACGGAGACCAGACCCTTTTATCATTTTTGTGAATGGATGTGGCCCAAACGAGAATTGGAACCCCCACCCCGTTGGTTTTGCCAGCTCCACGCTCCCCTCCATTTATCCCACATTCATAACAAACAACGGACACAAAGACACAAAGCTGTAAGAAAAATACTTTCTGTAAAGAATATAACCAAGCTAGTGAGAATATAGTGTATTTGCGTTGATTTATTTGACTGTATTCCTGTCAGatggacatttttacaaaatgGCCACAAGTTTCACACGGACCCACCACCCCAAGCTAAGTTACTTCCGTTTTACGTCATTTAGCAAGGTCTCACAGTTGTGTATAAATTGTTGAGTTTGATTCTGCAGACACTAGGACTGTCTGTTAGCTAAATTAATGTATAATACCCCTTCattctagcacacacacacggctacaGTGTTTAATAAGAGATCATATCTACGAGTCTTTTCTAAATGCACACAGGTGTGTACCCGCAGCTGGTACCCAAAACAAAAACCACGAAATATGCAAATTCTACAAATTGTAAAACATACTGCTTGGATATTTGTAAATACCTTTCAAATGGATTGTTAACCAAAAATGGACATTGAGATACTATCGTTGAGTTTATGACACTATATTCTGTTTCATAAACTGAACGAGAAGGCTCGTCTCATATCACTGGCGTACCTTGTCATATTATAGCTTGCTCGTAACTGAAATGCCCTGTGTCAGCCTATCACACACTCAACGAAGGGTAAAAAATAACATCGCCAGAGCTCTCCATTTTGTGCGATTAATGCATTGTGGGAGTATTTGCTGTACCCTACACACCTTCACGAGTTACACACCTCATTAAGTCAGTTATATCAGTACAATAGACATGTGTTCAAGCTATATGTTGAATCACACAGGCAAAAGTACAGTACCATTTCTTTTATAACACACGTCTCCCAGAGCATTCTGGGAGTTGGAGTCCTTTTTTTTGGCTGATTCGCTTCAGGAACAGTATTAGGCCTCGCCGTGCGATCTTTGTGTTCTACAGTTCAATAAAAGCTCTCCTCTTTATTGGCTCTGCTCTGACGCAGGAGTGTATAAGACCTCAgttacaaaaaataaaaacctaCAAGCAGGGACAGAGAAGGATTTCCTCTGGGTGCACAGCCTGAGGGAGACGGCTTGTGCGGTGTTGGGAGTTAAAAAAAAATAGGCGTGTCTACTTGCAGGCTCTTCTGTCTAGGCAATTCGGTTTCAGATGAGCCAACGGGGATCCATTGGTTCTCTGTAGCCCCTGTGTCCGTCCAGCCCAGAGCGAGGCAGGGATTCTGGGGTAGGAGGGTGGCGGCGTAACGGCAGGTCCCTCTCCCCAAAAGCAGGTCAGAGTGGTGGAGGGGTAAGTGCTCCTCTTCTCCCCTACCACCCCACCCCCCCGGAGGGAGATAGTGTGGTTGGAATGTGACAGAAGCAGCAGGTGGAGGACAGAACGTAAGaatgtgggggggtgggggggggggggttctttccCCCTCTTATGCTTAAAAGTTGCACATTTTCTTGTACATAATGTTACACCTTAACTTACTTGCATTCGTTTTTTTTCCTACTGCCCATGTCTTCCACATACCTAACCAGACTCACTGACAAATCTATTCCCCACTCAGTTCCCCACGCATGAAACTCACTGTGGCCGAGTTTCCAATAAATCAGGGTAATCCTAACCCCCCCCGGCTTAGGTCACACGTCCTCTTTGCGAATGCTTTTGCACGCCCTCTCTGAGGTCACTTCCTGTGTGAGCTCACTTCCTCTGCGGGGTGTCGGTGAAGAGCATGCTGAACTTGCGAAGCTGCTCGCTGGCCGAGTGGCTCTCTTCCTGGAGCCGCTGGTTATTCTGCCGCAGGTTAGCCATCTCAGCCAACAGGTGCACTTTGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2165471 True 3023 lncRNA 0.44 2 3170898 3173962

Neighbor

gene id symbol gene type direction distance location
map3k10 map3k10 coding downstream 102792 3023415 ~ 3068106 (-)
LOC118944109 NA coding downstream 445863 2722947 ~ 2725035 (-)
gfm1 gfm1 coding downstream 471890 2686141 ~ 2699008 (-)
LOC110503548 LOC106612480 coding downstream 513086 2643414 ~ 2657812 (-)
LOC118944084 LOC106612509 coding downstream 538732 2614267 ~ 2632166 (-)
LOC110503562 LOC106612510 coding upstream 3250 3177212 ~ 3179527 (-)
LOC110503563 LOC106612495 coding upstream 5625 3179587 ~ 3188674 (-)
LOC110503509 NA coding upstream 104329 3278291 ~ 3281058 (-)
trnastop-uca NA coding upstream 107471 3281433 ~ 3281519 (-)
trnastop-uca-2 NA coding upstream 108114 3282076 ~ 3282162 (-)
G1892859 fosb non-coding downstream 212595 2954028 ~ 2958303 (-)
G1892845 NA non-coding downstream 230910 2939788 ~ 2939988 (-)
G1892843 NA non-coding downstream 232008 2938558 ~ 2938890 (-)
G1892842 NA non-coding downstream 233187 2937465 ~ 2937711 (-)
G1892833 NA non-coding downstream 244820 2925873 ~ 2926078 (-)
G1892973 NA non-coding upstream 9151 3183113 ~ 3183373 (-)
G1892980 NA non-coding upstream 22367 3196329 ~ 3196557 (-)
G1892984 NA non-coding upstream 25108 3199070 ~ 3199304 (-)
G1892988 NA non-coding upstream 32783 3206745 ~ 3248318 (-)
G1892888 NA other downstream 151457 3013455 ~ 3019441 (-)
G1892841 NA other downstream 233847 2936184 ~ 2937051 (-)
G1891499 NA other downstream 1365836 1802008 ~ 1805430 (-)
LOC110503527 med29 other downstream 2079908 1087227 ~ 1091024 (-)
G1889857 NA other downstream 2611799 557130 ~ 559099 (-)
G1893790 LOC106612372 other upstream 736747 3881288 ~ 3914848 (-)
egln2 egln2 other upstream 879873 4053778 ~ 4075685 (-)
si:dkey-202l22.3 LOC106612399 other upstream 1117887 4289886 ~ 4294714 (-)
G1894611 NA other upstream 1179616 4353578 ~ 4353936 (-)
G1896030 NA other upstream 2694934 5868896 ~ 5869218 (-)

Expression


Co-expression Network