XLOC_038021


Basic Information

Item Value
gene id XLOC_038021
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36399911 ~ 36413250 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075421
CCCAAACAGAGGAGGCCGTTCGCTTCTCAGCAGACTGACTTCAGCAGAGAGCAGATCCAGCTGGAAGATGGAGGCGTTCATGTACTCCGTCCAGAAGATGGAATTCTGGTACTGCGCAATCCCAAACGGtaccTGTTGAGAGGATCCACCACTATGGCTCTGGGATGAGACATGTCTCCCTCGAGAAGAGTCTTCCTGGTTTCAGATGCCCGCTCCAGCCTGGCCACGCTGATGGTTTTTCTGTAGCCATCATTGGTCCAGTACAAATTATTCCCAATCCAATCCACAGAAATCCCCTCTACATTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075421 True 306 lncRNA 0.51 2 36399911 36413250
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_038020 BX005438.1 coding downstream 279385 36118960 ~ 36120526 (-)
XLOC_038019 NA coding downstream 404519 35990664 ~ 35995392 (-)
XLOC_038018 dnajc28 coding downstream 524860 35872698 ~ 35875051 (-)
XLOC_038016 NA coding downstream 567157 35680968 ~ 35832754 (-)
XLOC_038017 CR759895.1 coding downstream 698139 35701655 ~ 35701772 (-)
XLOC_038022 NA coding upstream 332285 36745535 ~ 36746819 (-)
XLOC_038023 CR932978.3 coding upstream 347639 36760889 ~ 36761294 (-)
XLOC_038024 CR932978.2 coding upstream 352373 36765623 ~ 36766028 (-)
XLOC_038025 CR932978.1 coding upstream 357107 36770357 ~ 36770663 (-)
XLOC_038026 BX664716.1 coding upstream 369297 36782547 ~ 36782665 (-)
XLOC_038004 BX601644.3 non-coding downstream 1548107 34848860 ~ 34851804 (-)

Expression

Expression of XLOC_038021 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Expression of XLOC_038021 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: -0.5 to 0.5.
End of interactive chart.

Co-expression Network