XLOC_038022


Basic Information

Item Value
gene id XLOC_038022
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 36745535 ~ 36746819 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075006
aattgaaggtcaggtgttgctgactacagataggttcttaaatggaggcatgtgaaagcaaggaaagtgaaacttcagctagaccttgagttcaatttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcaaaactggaccaccacctatttcatttgatgacaattttaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggtttatgatgagcaggaactgaatgatgtcagttcatgacggactactgttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccatgattgataatcctgctgactgaagaagctttattggccctgcattcactgagggtctctgttgtcctgaagaatgaattagacaccacccacagcacacttccagacctttcttgtcttgtatggattaatgtatgctcttcacataatatatagtaaaggactttgaacttgtgcaaaaagttttgcttggcatggatgatggaaaataaaaagtctcgtagcatggaaaccttaaagaatgagttaatgtagagctttttttttttttaacttaataaagactgtctctggggtagtaacttcaaaacatttatttacctttaattggtaaatatgcattttattatatatagggatagtttgtccaaatgtaaaattctgtcatttactaactctt

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0031167 rRNA methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140102 catalytic activity, acting on a rRNA molecular_function
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075006 True 804 lncRNA 0.37 5 36745535 36746819

Neighbor

gene id symbol gene type direction distance location
XLOC_038021 NA coding downstream 332285 36399911 ~ 36413250 (-)
XLOC_038020 BX005438.1 coding downstream 625009 36118960 ~ 36120526 (-)
XLOC_038019 NA coding downstream 750143 35990664 ~ 35995392 (-)
XLOC_038018 dnajc28 coding downstream 870484 35872698 ~ 35875051 (-)
XLOC_038016 NA coding downstream 912781 35680968 ~ 35832754 (-)
XLOC_038023 CR932978.3 coding upstream 14070 36760889 ~ 36761294 (-)
XLOC_038024 CR932978.2 coding upstream 18804 36765623 ~ 36766028 (-)
XLOC_038025 CR932978.1 coding upstream 23538 36770357 ~ 36770663 (-)
XLOC_038026 BX664716.1 coding upstream 35728 36782547 ~ 36782665 (-)
XLOC_038027 ralba coding upstream 149438 36896257 ~ 36924388 (-)
XLOC_038017 CR759895.1 non-coding downstream 1043763 35701655 ~ 35701772 (-)
XLOC_038028 NA non-coding upstream 180007 36926826 ~ 36940750 (-)

Expression


Co-expression Network