Gene
RNA
| Item | Value |
|---|---|
| gene id | G1894083 |
| gene name | LOC106612398 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 4444623 ~ 4444976 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: Down syndrome cell adhesion molecule-like protein 1 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2166742 | True | 354 | TUCP | 0.65 | 1 | 4444623 | 4444976 |
4,443,600
4,444,000
4,444,400
4,444,800
4,445,200
4,445,600
4,446,000
4,446,000
4,446,400
4,446,800
4,447,200
4,447,600
4,448,000
4,448,400
NC_048588.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118944093 | NA | coding | upstream | 104099 | 4336602 ~ 4341404 (+) |
| LOC110503491 | LOC106612400 | coding | upstream | 166469 | 4267530 ~ 4278154 (+) |
| LOC110503492 | prkd2 | coding | upstream | 183112 | 4200946 ~ 4261511 (+) |
| LOC110503494 | strn4 | coding | upstream | 248090 | 4176229 ~ 4196533 (+) |
| LOC110503495 | slc1a5 | coding | upstream | 274274 | 4158455 ~ 4170349 (+) |
| il10r1 | il10r1 | coding | downstream | 277663 | 4722639 ~ 4726930 (+) |
| tmprss4a | LOC106612727 | coding | downstream | 298657 | 4743633 ~ 4762831 (+) |
| LOC118944078 | NA | coding | downstream | 939482 | 5384458 ~ 5387799 (+) |
| LOC118944106 | NA | coding | downstream | 986483 | 5431459 ~ 5448034 (+) |
| zgc:162730 | tisb | coding | downstream | 1010785 | 5455761 ~ 5458351 (+) |
| G1894082 | NA | non-coding | upstream | 2745 | 4441580 ~ 4441878 (+) |
| G1894081 | NA | non-coding | upstream | 3227 | 4441197 ~ 4441396 (+) |
| G1894080 | LOC106612398 | non-coding | upstream | 5348 | 4438865 ~ 4439275 (+) |
| G1894079 | NA | non-coding | upstream | 6097 | 4438310 ~ 4438526 (+) |
| G1894077 | NA | non-coding | upstream | 10074 | 4434305 ~ 4434549 (+) |
| G1894084 | LOC103372157 | non-coding | downstream | 201 | 4445177 ~ 4445462 (+) |
| G1894085 | LOC106594959 | non-coding | downstream | 3205 | 4448181 ~ 4448575 (+) |
| G1894097 | NA | non-coding | downstream | 32994 | 4477970 ~ 4478194 (+) |
| G1894098 | NA | non-coding | downstream | 34562 | 4479538 ~ 4479827 (+) |
| G1894103 | NA | non-coding | downstream | 75961 | 4520937 ~ 4521237 (+) |
| G1893604 | NA | other | upstream | 154025 | 4289908 ~ 4290598 (+) |
| G1892702 | NA | other | upstream | 1142033 | 3270196 ~ 3302590 (+) |
| sipa1l3 | sipa1l3 | other | upstream | 1310900 | 3075396 ~ 3173993 (+) |
| fosb | fosb | other | upstream | 1483563 | 2951862 ~ 2961060 (+) |
| bl1s3 | bl1s3 | other | downstream | 1074045 | 5518991 ~ 5520163 (+) |
| G1895266 | LOC106612719 | other | downstream | 1076439 | 5521415 ~ 5522865 (+) |
| G1896894 | NA | other | downstream | 2495440 | 6940416 ~ 6941556 (+) |
| G1896931 | NA | other | downstream | 2572819 | 7017795 ~ 7018558 (+) |
| LOC110503629 | LOC106612674 | other | downstream | 2871976 | 7316925 ~ 7350759 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
