XLOC_038037


Basic Information

Item Value
gene id XLOC_038037
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38070084 ~ 38071916 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075008
gccaagttactttaactgtcataatGTTTTAACCATACcgcaaccaacaccagcagtcacagaaccacaataAGAGGTCACATCGAAACACTGCCCCCTCTCAACCACACACTGCACTTTTTACTTTCCAAATGGGGTTTCGtcctacacagcaaattcatctgagttaaattcttggtgttgaagcatttcagagtaaagtgttgacgttaaagagttagattttgataaatgaatataataagagttagaattgattttattcagtgctaaatcaaggagttatcttttcaacacttggtggtgttatttccaacatccgggaattcatgcagccccagtcactgtagaattttccagacgccattttccatctgaggtttagaacagcaactgcaaactagcgagggaatccccggagcagcctaacgttagcctactctgcccggatgctaacggcaacacaggacggtttccataagctctggagagtttctaaaacatatatgccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataatgaag

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075008 True 636 lncRNA 0.42 3 38070084 38071916

Neighbor

gene id symbol gene type direction distance location
XLOC_038036 hacd2 coding downstream 27145 38029475 ~ 38042939 (-)
XLOC_038035 adcy5 coding downstream 48087 37872577 ~ 38021997 (-)
XLOC_038034 BX511075.1 coding downstream 249872 37817266 ~ 37820212 (-)
XLOC_038033 sema5ba coding downstream 320111 37481434 ~ 37749973 (-)
XLOC_038032 hspbap1 coding downstream 702607 37341240 ~ 37367477 (-)
XLOC_038038 si:dkey-219c10.4 coding upstream 68995 38140911 ~ 38156894 (-)
XLOC_038039 BX548038.3 coding upstream 132491 38204407 ~ 38204528 (-)
XLOC_038040 NA coding upstream 279665 38351581 ~ 38352885 (-)
XLOC_038041 ccdc93 coding upstream 281536 38353452 ~ 38368138 (-)
XLOC_038042 znf142 coding upstream 313645 38385561 ~ 38399432 (-)
XLOC_038031 NA non-coding downstream 932828 37118184 ~ 37137256 (-)
XLOC_038030 NA non-coding downstream 1049613 37015729 ~ 37020471 (-)
XLOC_038029 NA non-coding downstream 1110423 36956993 ~ 36959661 (-)
XLOC_038028 NA non-coding downstream 1129334 36926826 ~ 36940750 (-)
XLOC_038043 BX001051.1 non-coding upstream 397530 38469446 ~ 38469566 (-)
XLOC_038044 NA non-coding upstream 486723 38558639 ~ 38560263 (-)
XLOC_038046 NA non-coding upstream 636547 38708463 ~ 38709221 (-)

Expression


Co-expression Network