XLOC_038037


Basic Information

Item Value
gene id XLOC_038037
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 38070084 ~ 38071916 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075008
gccaagttactttaactgtcataatGTTTTAACCATACcgcaaccaacaccagcagtcacagaaccacaataAGAGGTCACATCGAAACACTGCCCCCTCTCAACCACACACTGCACTTTTTACTTTCCAAATGGGGTTTCGtcctacacagcaaattcatctgagttaaattcttggtgttgaagcatttcagagtaaagtgttgacgttaaagagttagattttgataaatgaatataataagagttagaattgattttattcagtgctaaatcaaggagttatcttttcaacacttggtggtgttatttccaacatccgggaattcatgcagccccagtcactgtagaattttccagacgccattttccatctgaggtttagaacagcaactgcaaactagcgagggaatccccggagcagcctaacgttagcctactctgcccggatgctaacggcaacacaggacggtttccataagctctggagagtttctaaaacatatatgccacagttctctatacaataacacaagaccctgtgacggtggctgattagagacggatggtgtatttccagagttggtgaaatgaccaagcacaccttcttggtcatatgtggtgataataatgaag

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0001702 gastrulation with mouth forming second biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075008 True 636 lncRNA 0.42 3 38070084 38071916
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_038036 hacd2 coding downstream 27145 38029475 ~ 38042939 (-)
XLOC_038035 adcy5 coding downstream 48087 37872577 ~ 38021997 (-)
XLOC_038034 BX511075.1 coding downstream 249872 37817266 ~ 37820212 (-)
XLOC_038033 sema5ba coding downstream 320111 37481434 ~ 37749973 (-)
XLOC_038032 hspbap1 coding downstream 702607 37341240 ~ 37367477 (-)
XLOC_038038 si:dkey-219c10.4 coding upstream 68995 38140911 ~ 38156894 (-)
XLOC_038039 BX548038.3 coding upstream 132491 38204407 ~ 38204528 (-)
XLOC_038040 NA coding upstream 279665 38351581 ~ 38352885 (-)
XLOC_038041 ccdc93 coding upstream 281536 38353452 ~ 38368138 (-)
XLOC_038042 znf142 coding upstream 313645 38385561 ~ 38399432 (-)
XLOC_038031 NA non-coding downstream 932828 37118184 ~ 37137256 (-)
XLOC_038030 NA non-coding downstream 1049613 37015729 ~ 37020471 (-)
XLOC_038029 NA non-coding downstream 1110423 36956993 ~ 36959661 (-)
XLOC_038028 NA non-coding downstream 1129334 36926826 ~ 36940750 (-)
XLOC_038043 BX001051.1 non-coding upstream 397530 38469446 ~ 38469566 (-)
XLOC_038044 NA non-coding upstream 486723 38558639 ~ 38560263 (-)
XLOC_038046 NA non-coding upstream 636547 38708463 ~ 38709221 (-)

Expression

Expression of XLOC_038037 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_038037 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network