G1894175


Basic Information

Item Value
gene id G1894175
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 4679975 ~ 4681691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2166839
CCATAGACAAATGGGTCCAcctctttcttctccttttcACCATCTGAAAATACAGGCACTGAGAAAGGCAAGGAAATTAGATACAAGCCATATAGAACATCTAACGATCGTAGCAGTTTTCAATGCTGTACATACCTAGTAGTATAATGGGGCTAACATGGTTAAACACATTGATTACAGACAGGCTACTCACCCTCGGCACATGGGTCTGCGactgctgagagagagcgagagagcgagagaaagagagcaagagagaaagctTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGATTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGATTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGAAAGGGATCTTGACAGGTTACGGTATTCACATCTAGAGATTGGATAAGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGATTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCGGTTGTGCAATGGCACTGGCCTTGTGGATGATTTGTTGTATGGACTACCTCAGTTACCtccccgtcctcctcctcctcccctactctATTCTTTCAACCCTCGCTCCCTGTGTCAATTCATTTCCTAAATTCCCCAGTACACAAACACTGTCTGGCCCAGTGCACAAACCCCAGACTTTATATCTGCTCCACAaccccattgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcactctACTCAGCATGTATACTCATATCAACAGACAGAGAGTCACACTGAATGGGGAGTGAGTGCACGAAAAACAAGGAATTATAGTGGGAGGGAGATTAATGGAGGAAAATGTACATCTGGAGACGGAGAAAGGGAAGAGGATTAATGGAGGAAAATGTATAGTCTGGAGACGGAGACGAGAGACAAAAGaagaaaggaggaaaggaagagaaacCAGAACAGACGGTGTGAACAAAACACAGATGAAAGGATGGAGGGGATAcggggagaagaaaggagggcaGGAAAAGAGGGAGGTGGAAAAGAATGTGAACtgaagacaggtgggaaaaagccAAAGCAATAGAATGTGGAAGGTTCGTCCGATTGGCAGACAAACAAAAGTCTGGATAACACCAGATGACATGGATGGCTCAGTTGCtctctccagtgatgtactgaacCCATGACTTCAAACTTAGAATCTTAATGgcataataatgtgtgtgtgtgtggcagagttacagttaatgcatgtgtgtgtgtgtcatggcctAAATATACTTGTGATATGGAGTATATTACATAGTACTTGGaatttacagtatagtacattatacttgggatatacagtatagtacattatacttgggatatacagtatagtacattaaacttgggatatacag
>TU2166842
CCATAGACAAATGGGTCCAcctctttcttctccttttcACCATCTGAAAATACAGGCACTGAGAAAGGCAAGGAAATTAGATACAAGCCATATAGAACATCTAACGATCGTAGCAGTTTTCAATGCTGTACATACCTAGTAGTATAATGGGGCTAACATGGTTAAACACATTGATTACAGACAGGCTACTCACCCTCGGCACATGGGTCTGCGactgctgagagagagcgagagagcgagagaaagagagcaagagagaaagctTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGAAAGGGATCTTGACAGGTTACGGTATTCACATCTAGAGATTGGATAAGGATCTTGACAGGTTACGGTATTCACATCCAGAGATTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCAGAGCTTGGATAGGGATCTTGACAGGTTACGGTATTCACATCCGGTTGTGCAATGGCACTGGCCTTGTGGATGATTTGTTGTATGGACTACCTCAGTTACCtccccgtcctcctcctcctcccctactctATTCTTTCAACCCTCGCTCCCTGTGTCAATTCATTTCCTAAATTCCCCAGTACACAAACACTGTCTGGCCCAGTGCACAAACCCCAGACTTTATATCTGCTCCACAaccccattgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcactctACTCAGCATGTATACTCATATCAACAGACAGAGAGTCACACTGAATGGGGAGTGAGTGCACGAAAAACAAGGAATTATAGTGGGAGGGAGATTAATGGAGGAAAATGTACATCTGGAGACGGAGAAAGGGAAGAGGATTAATGGAGGAAAATGTATAGTCTGGAGACGGAGACGAGAGACAAAAGaagaaaggaggaaaggaagagaaacCAGAACAGACGGTGTGAACAAAACACAGATGAAAGGATGGAGGGGATAcggggagaagaaaggagggcaGGAAAAGAGGGAGGTGGAAAAGAATGTGAACtgaagacaggtgggaaaaagccAAAGCAATAGAATGTGGAAGGTTCGTCCGATTGGCAGACAAACAAAAGTCTGGATAACACCAGATGACATGGATGGCTCAGTTGCtctctccagtgatgtactgaacCCATGACTTCAAACTTAGAATCTTAATGgcataataatgtgtgtgtgtgtggcagagttacagttaatgcatgtgtgtgtgtgtcatggcctAAATATACTTGTGATATGGAGTATATTACATAGTACTTGGaatttacagtatagtacattatacttgggatatacagtatagtacattatacttgggatatacagtatagtacattaaacttgggatatacag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2166839 False 1588 lncRNA 0.44 2 4679975 4681691
TU2166842 True 1459 lncRNA 0.44 4 4679975 4681691
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118944093 NA coding upstream 339451 4336602 ~ 4341404 (+)
LOC110503491 LOC106612400 coding upstream 401821 4267530 ~ 4278154 (+)
LOC110503492 prkd2 coding upstream 418464 4200946 ~ 4261511 (+)
LOC110503494 strn4 coding upstream 483442 4176229 ~ 4196533 (+)
LOC110503495 slc1a5 coding upstream 509626 4158455 ~ 4170349 (+)
il10r1 il10r1 coding downstream 40948 4722639 ~ 4726930 (+)
tmprss4a LOC106612727 coding downstream 61942 4743633 ~ 4762831 (+)
LOC118944078 NA coding downstream 702767 5384458 ~ 5387799 (+)
LOC118944106 NA coding downstream 749768 5431459 ~ 5448034 (+)
zgc:162730 tisb coding downstream 774070 5455761 ~ 5458351 (+)
G1894166 LOC106612730 non-coding upstream 4342 4671136 ~ 4675633 (+)
G1894119 NA non-coding upstream 93512 4586063 ~ 4586463 (+)
G1894114 NA non-coding upstream 101431 4578199 ~ 4578544 (+)
G1894113 NA non-coding upstream 104072 4575683 ~ 4575903 (+)
G1894111 NA non-coding upstream 106788 4572441 ~ 4573187 (+)
G1894202 NA non-coding downstream 53784 4735475 ~ 4736220 (+)
G1894207 NA non-coding downstream 81376 4763067 ~ 4766750 (+)
G1894541 NA non-coding downstream 578140 5259831 ~ 5260518 (+)
G1895178 NA non-coding downstream 692329 5374020 ~ 5374256 (+)
G1895196 NA non-coding downstream 716744 5398435 ~ 5398652 (+)
G1894083 LOC106612398 other upstream 234999 4444623 ~ 4444976 (+)
G1893604 NA other upstream 389377 4289908 ~ 4290598 (+)
G1892702 NA other upstream 1377385 3270196 ~ 3302590 (+)
sipa1l3 sipa1l3 other upstream 1546252 3075396 ~ 3173993 (+)
bl1s3 bl1s3 other downstream 837330 5518991 ~ 5520163 (+)
G1895266 LOC106612719 other downstream 839724 5521415 ~ 5522865 (+)
G1896894 NA other downstream 2258725 6940416 ~ 6941556 (+)
G1896931 NA other downstream 2336104 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 2635261 7316925 ~ 7350759 (+)

Expression

G1894175 Expression in all Baseline Samples

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G1894175 Expression in each Bioproject

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G1894175 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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Co-expression Network