G1895266 (LOC106612719)


Basic Information

Item Value
gene id G1895266
gene name LOC106612719
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5521415 ~ 5522865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2168015
GCGCTTTGATTTTAATGGCCCAGATTTCCCAATGGATGCCATTTTCTAGTAGCTCAGTCTCACTTTTGCCCTTTCCAATGAAGGGCACAAGGCTGTCATCAAGCCTGCCTTTTTCAAATGCAGAGAAATTCCCAGCTCTATGTTTTCCTCTCTTAAAACATTCCCAGTTAGGCTCTAGATAGCTGTCAGCGAGGGTTTTAAAAGCTCTGCATTTGGAGTCTGGGGACATCTCAGGCACTGAGAAGGGCAGGGTGACCATCTTGCTTACAAAGTCGTACCCGCTGGATGTCAGCCCACAGATCCACATGGTGCTCTCCACACAGCCCACCACCACTCCGGGGTCCACAGCTAGGATGGACACAAACGGGACATTCTCCCCCGCCAAGGTGCTGACCACCCTGTCTGGGCCGCAGCGGTCCAGGTGGGTGATCTCCAGCACCACACGGATCCTCCTCCCCTCGAACACCTCCATGAAGTGGGTGATTTCCACCATGAAGCCCACCTCCTTCCTCACCTTGTTCATGAAGCCCATCTGGTCGCTGATGGCCGAGCTGTTCATCTGGTGCTGGATGCTGCTGCCCATGGTGTAGAGCAGGTGCTTAGATGTCTGCAGAATAGTCCTCAGGGCGAAGACTGCGGGAGGCCCCAGTGTTGCTATGGCCATCGATTCCAGCACATTGACCCAACTGCGTGTGCCATTTGTTTGGAGCTCAAAGCCATAAAAGTAGAGCAGGGTACATGTGCCAATGCTGGAAATTACAGTGGCTAGGACTACAACccagagggggaggcagagcaTCTTTATGGCTTTCCAATTGACCTCATCACCTTTGCTCGTGACTTTCTTTGGGTAGGGATGCTGGGTGACTCTATAGAGGCCCAGGGGAAGTTCCCCAAAGGCATCCTGGATGCCCTTGAAGAGGCGGATCGCCAACCCAGCCCAGAGTTTATCACTGCCTGCAAAGTGTCAGGCACTGAAgcgctcctcttcctccctcccacacGGGACGGAAGAAgctgatggagaggaggagggccaAATAGCTAATCCACTCTGGAGGAGGTCTCTTCAGCTTGTGCTTCTGGTCTCTCCACTCTGCCTCTCTGTTCATGTAAACTGCGAATGTAGAAAGAGCAACACAATTATATTTttagaaaaaacaaaacaactaaAGTCATGTGAACTCAACCTAAGTGTTAAACTTACTCTTGATCTTCTTCAGTAGAGTTTCAGTGCGGCTGGGGCACTGGGAGAACAGACCTACGATGGCCCGGAGGTGCCACCTTGAATAATGCCCTGGACAGTCCATATGCCTAGGCATCATCCAACAGGGCACCTTTTTGTTTGACCAATGTAGAGGTAGACATGGCAATCAATAGAAGCTGTTATTAGCTGTATCCCTAAATGACTAAATGTCCGATACATTTACTAACTTTCCACTTACCTTGTC

Function

NR:

description
LOW QUALITY PROTEIN: NTPase KAP family P-loop domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2168015 True 1451 TUCP 0.51 1 5521415 5522865

Neighbor

gene id symbol gene type direction distance location
bl1s3 bl1s3 coding upstream 1252 5518991 ~ 5520163 (+)
zgc:162730 tisb coding upstream 63064 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 73381 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 133616 5384458 ~ 5387799 (+)
tmprss4a LOC106612727 coding upstream 758584 4743633 ~ 4762831 (+)
LOC110503581 LOC106612717 coding downstream 351620 5874485 ~ 6033122 (+)
LOC110503583 LOC106612716 coding downstream 550722 6073587 ~ 6076625 (+)
LOC110503584 NA coding downstream 619538 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 633975 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 762853 6285718 ~ 6356497 (+)
G1895226 NA non-coding upstream 72213 5448965 ~ 5449202 (+)
G1895213 NA non-coding upstream 100988 5419766 ~ 5420427 (+)
G1895204 NA non-coding upstream 112423 5408768 ~ 5408992 (+)
G1895197 NA non-coding upstream 121710 5399484 ~ 5399705 (+)
G1895196 NA non-coding upstream 122763 5398435 ~ 5398652 (+)
G1895268 NA non-coding downstream 1990 5524855 ~ 5525161 (+)
G1895270 NA non-coding downstream 4016 5526881 ~ 5527106 (+)
G1895292 NA non-coding downstream 38429 5561294 ~ 5561579 (+)
G1895294 NA non-coding downstream 39321 5562186 ~ 5562508 (+)
G1895526 NA non-coding downstream 109413 5632278 ~ 5632826 (+)
G1894083 LOC106612398 other upstream 1076439 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1180011 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1230817 4289908 ~ 4290598 (+)
G1892702 NA other upstream 2218825 3270196 ~ 3302590 (+)
G1896894 NA other downstream 1417551 6940416 ~ 6941556 (+)
G1896931 NA other downstream 1494930 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1794087 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 2553341 8076117 ~ 8080686 (+)
G1898300 NA other downstream 3834186 9357051 ~ 9359164 (+)

Expression


Co-expression Network