G1895574


Basic Information

Item Value
gene id G1895574
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5671898 ~ 5672230 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2168347
cccgtatcatctcctccttaaagtcttgatactggttagtacactcagcccttgcctcccagattgccgtgccccactcacgagcccgtccaataaggagagatatgacgtaggcgacacgagcagtgctcctggagtaagtgttgggctggagagaaaacactatcacactgggtgaggaacgagcggcattcagtgggctccccagagtaacacggcgggttattgattctgggctccggagattcgaaagccctggaagtggccggtggatcgaggcggagatggtgaacctgttctgtgaggttggagacttgggtggccagggtctca

Function

NR:

description
PREDICTED: protein LDOC1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2168347 True 333 lncRNA 0.56 1 5671898 5672230

Neighbor

gene id symbol gene type direction distance location
bl1s3 bl1s3 coding upstream 151735 5518991 ~ 5520163 (+)
zgc:162730 tisb coding upstream 213547 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 223864 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 284099 5384458 ~ 5387799 (+)
tmprss4a LOC106612727 coding upstream 909067 4743633 ~ 4762831 (+)
LOC110503581 LOC106612717 coding downstream 202255 5874485 ~ 6033122 (+)
LOC110503583 LOC106612716 coding downstream 401357 6073587 ~ 6076625 (+)
LOC110503584 NA coding downstream 470173 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 484610 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 613488 6285718 ~ 6356497 (+)
G1895566 NA non-coding upstream 9788 5661754 ~ 5662110 (+)
G1895564 NA non-coding upstream 10368 5661308 ~ 5661530 (+)
G1895526 NA non-coding upstream 39072 5632278 ~ 5632826 (+)
G1895294 NA non-coding upstream 109390 5562186 ~ 5562508 (+)
G1895292 NA non-coding upstream 110319 5561294 ~ 5561579 (+)
G1895610 NA non-coding downstream 26088 5698318 ~ 5698527 (+)
G1895618 NA non-coding downstream 30014 5702244 ~ 5702482 (+)
G1895624 NA non-coding downstream 35416 5707646 ~ 5709248 (+)
G1895635 NA non-coding downstream 43133 5715363 ~ 5715565 (+)
G1895664 NA non-coding downstream 61402 5733632 ~ 5733862 (+)
G1895266 LOC106612719 other upstream 149033 5521415 ~ 5522865 (+)
G1894083 LOC106612398 other upstream 1226922 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1330494 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1381300 4289908 ~ 4290598 (+)
G1896894 NA other downstream 1268186 6940416 ~ 6941556 (+)
G1896931 NA other downstream 1345565 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1644722 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 2403976 8076117 ~ 8080686 (+)
G1898300 NA other downstream 3684821 9357051 ~ 9359164 (+)

Expression


Co-expression Network