G1895618


Basic Information

Item Value
gene id G1895618
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5702244 ~ 5702482 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2168391
AAATTAttgcattctatccatgctggctttcgcgggctacctgagacatgaaacagataggTGAGAGGGCATACAGGCTGTCGCCAATTTATTAATGGCAAATTCTTTGTTATCATTCAATGAGAGACGACTAATTTTCATGCACATGTTTTCATTGAGAAATAAtacaccaaacatcttagttagatgtcaaATTGTGTGACTAAGATCTGCTcggcaaaaacgtcaaaattaattac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2168391 True 239 lncRNA 0.37 1 5702244 5702482

Neighbor

gene id symbol gene type direction distance location
bl1s3 bl1s3 coding upstream 182081 5518991 ~ 5520163 (+)
zgc:162730 tisb coding upstream 243893 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 254210 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 314445 5384458 ~ 5387799 (+)
tmprss4a LOC106612727 coding upstream 939413 4743633 ~ 4762831 (+)
LOC110503581 LOC106612717 coding downstream 172003 5874485 ~ 6033122 (+)
LOC110503583 LOC106612716 coding downstream 371105 6073587 ~ 6076625 (+)
LOC110503584 NA coding downstream 439921 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 454358 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 583236 6285718 ~ 6356497 (+)
G1895610 NA non-coding upstream 3717 5698318 ~ 5698527 (+)
G1895574 NA non-coding upstream 30014 5671898 ~ 5672230 (+)
G1895566 NA non-coding upstream 40134 5661754 ~ 5662110 (+)
G1895564 NA non-coding upstream 40714 5661308 ~ 5661530 (+)
G1895526 NA non-coding upstream 69418 5632278 ~ 5632826 (+)
G1895624 NA non-coding downstream 5164 5707646 ~ 5709248 (+)
G1895635 NA non-coding downstream 12881 5715363 ~ 5715565 (+)
G1895664 NA non-coding downstream 31150 5733632 ~ 5733862 (+)
G1895749 NA non-coding downstream 79486 5781968 ~ 5782176 (+)
G1895806 NA non-coding downstream 121156 5823638 ~ 5823845 (+)
G1895266 LOC106612719 other upstream 179379 5521415 ~ 5522865 (+)
G1894083 LOC106612398 other upstream 1257268 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1360840 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1411646 4289908 ~ 4290598 (+)
G1896894 NA other downstream 1237934 6940416 ~ 6941556 (+)
G1896931 NA other downstream 1315313 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1614470 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 2373724 8076117 ~ 8080686 (+)
G1898300 NA other downstream 3654569 9357051 ~ 9359164 (+)

Expression


Co-expression Network