G1895624


Basic Information

Item Value
gene id G1895624
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 5707646 ~ 5709248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2168397
atttggggcactaCTGGAAAAGATGTTTAACGAATTACCGTATCCTGAATGAACtcaaaaatatatagatatcaATAGTCACTAGTCAATCAtttcctcatatcagtctcattttGAATGTCGCAGACTTCGTGAATCTGCACAATCCCGAGTCTCACTGATCACTCTGTACCATACAAattgatttgtttatttatttaccaaCAAGCTAAATGATAACATaggatacacacacatgcataggtTATTGATTTCAGTAgcccttgccccaaactgccactCTTTTGAGTAAGAAGTAATGTATGTATTTACGTGTTGGAGATCATCGTTGGGTATCTCTGTTGGGCACAGGCCTTCGTGGGCAGAGTTCTGCTTGGTGAGAGGATCTCGATTGGTCCCCAGTTCTTTGGATGGGCTTCTCCTTCGTTCTCGGGTGAaagtctctgattgtccacaagaggtcacaatgtccttcttctTAGTTGTCGGTTTACTTGCACTTGTTCTGGAAGAGTGGTCATCTGAGAATGGCTAATCAACCGTGTTGATGATTCCAGAATGGGGATGAGAGCAGTGTAGGCAACGATGACTTGAAGAGAAGAACCTTCAAATCATCATTGCTTACACTGCTCTCATCACCACTCTGGGATCATCGACACTGCTGATTAGCTGTCCTCAGAAGATCACTCTTCCAGAAGAAGTGCAAGTAAACAGTCAACTAagaagaaggacattgtgacctcttgtGGGAAATCAGAGATTTACACCTGAGAACGAAGGAGAAGGCCCTCATCTGAAGAACTAGGCCTCCATCGAACCCTTCTCACAAAGTGGAACCCTTTCCATGAAGGCCTGGGCCTAATAGAGATACCCGACGAAGACCTTAAAAACATACATTACTTCTTACCCAAAAGAGTGGCAGTTCGGGGCAAGGTATTAGGGTTATTGTGAGCATAGTTCCCAAATGTATCCAAGTgttgcttctttctctctctctctttaactctccaTCTTGTATAACAAGTGTCATATTGTGTTAATACGATGACAACAAGTCCCTAGCAGACTAAGTTTCTAATCAATAACCTAtaccatgtgtgtatgtgtgtgggggtgtgtgtgtgtgtgcgtgtgtgtgtgtatcagaggtgtggactcaagtcatatgacttggactcgagtcagactcgagtcacaaatatgatgacttgcaacttgACTTTGACTtcaacaccaatgactcgtgacttggaCTTGAACCTTTTGACccgacctgacttgataccctaCCCAAGCCCAAATGTTAAAAATGACgctattaaaaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2168397 True 1328 lncRNA 0.43 2 5707646 5709248

Neighbor

gene id symbol gene type direction distance location
bl1s3 bl1s3 coding upstream 187483 5518991 ~ 5520163 (+)
zgc:162730 tisb coding upstream 249295 5455761 ~ 5458351 (+)
LOC118944106 NA coding upstream 259612 5431459 ~ 5448034 (+)
LOC118944078 NA coding upstream 319847 5384458 ~ 5387799 (+)
tmprss4a LOC106612727 coding upstream 944815 4743633 ~ 4762831 (+)
LOC110503581 LOC106612717 coding downstream 165237 5874485 ~ 6033122 (+)
LOC110503583 LOC106612716 coding downstream 364339 6073587 ~ 6076625 (+)
LOC110503584 NA coding downstream 433155 6142403 ~ 6143853 (+)
LOC118944026 NA coding downstream 447592 6156840 ~ 6169793 (+)
LOC110503587 LOC106612711 coding downstream 576470 6285718 ~ 6356497 (+)
G1895618 NA non-coding upstream 5164 5702244 ~ 5702482 (+)
G1895610 NA non-coding upstream 9119 5698318 ~ 5698527 (+)
G1895574 NA non-coding upstream 35416 5671898 ~ 5672230 (+)
G1895566 NA non-coding upstream 45536 5661754 ~ 5662110 (+)
G1895564 NA non-coding upstream 46116 5661308 ~ 5661530 (+)
G1895635 NA non-coding downstream 6115 5715363 ~ 5715565 (+)
G1895664 NA non-coding downstream 24384 5733632 ~ 5733862 (+)
G1895749 NA non-coding downstream 72720 5781968 ~ 5782176 (+)
G1895806 NA non-coding downstream 114390 5823638 ~ 5823845 (+)
G1895853 NA non-coding downstream 160467 5869715 ~ 5943738 (+)
G1895266 LOC106612719 other upstream 184781 5521415 ~ 5522865 (+)
G1894083 LOC106612398 other upstream 1262670 4444623 ~ 4444976 (+)
LOC118944093 NA other upstream 1366242 4336602 ~ 4341404 (+)
G1893604 NA other upstream 1417048 4289908 ~ 4290598 (+)
G1896894 NA other downstream 1231168 6940416 ~ 6941556 (+)
G1896931 NA other downstream 1308547 7017795 ~ 7018558 (+)
LOC110503629 LOC106612674 other downstream 1607704 7316925 ~ 7350759 (+)
LOC118944073 LOC106612646 other downstream 2366958 8076117 ~ 8080686 (+)
G1898300 NA other downstream 3647803 9357051 ~ 9359164 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036074 dcp1a coding NC_007119.7 CM002892.2 53388005 ~ 53401791 (+)